Gene : Sobic.007G000400 S. bicolor v3.1.1
Defline:  (1 of 88) PF02362 - B3 DNA binding domain (B3) Genomic Order:  5
Name:  ? Sobic.007G000400 Secondary Identifier:  ? PAC:37934697
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G000400 0.5kb upstream 0.5kb upstream 4463 true Chr07: 68387-72849 Sorghum bicolor
Sobic.007G000400 0.5kb upstream 0.5kb upstream 500 false Chr07: 72350-72849 Sorghum bicolor
Sobic.007G000400 0.5kb downstream 0.5kb downstream 4463 true Chr07: 67887-72349 Sorghum bicolor
Sobic.007G000400 0.5kb downstream 0.5kb downstream 500 false Chr07: 67887-68386 Sorghum bicolor
Sobic.007G000400 1.0kb upstream 1.0kb upstream 4963 true Chr07: 68387-73349 Sorghum bicolor
Sobic.007G000400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 72350-73349 Sorghum bicolor
Sobic.007G000400 1.0kb downstream 1.0kb downstream 4963 true Chr07: 67387-72349 Sorghum bicolor
Sobic.007G000400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 67387-68386 Sorghum bicolor
Sobic.007G000400 2.0kb upstream 2.0kb upstream 5963 true Chr07: 68387-74349 Sorghum bicolor
Sobic.007G000400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 72350-74349 Sorghum bicolor
Sobic.007G000400 2.0kb downstream 2.0kb downstream 5963 true Chr07: 66387-72349 Sorghum bicolor
Sobic.007G000400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 66387-68386 Sorghum bicolor
Sobic.007G000400 5.0kb upstream 5.0kb upstream 8963 true Chr07: 68387-77349 Sorghum bicolor
Sobic.007G000400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 72350-77349 Sorghum bicolor
Sobic.007G000400 5.0kb downstream 5.0kb downstream 8963 true Chr07: 63387-72349 Sorghum bicolor
Sobic.007G000400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 63387-68386 Sorghum bicolor
Sobic.007G000400 10.0kb upstream 10.0kb upstream 13963 true Chr07: 68387-82349 Sorghum bicolor
Sobic.007G000400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 72350-82349 Sorghum bicolor
Sobic.007G000400 10.0kb downstream 10.0kb downstream 13963 true Chr07: 58387-72349 Sorghum bicolor
Sobic.007G000400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 58387-68386 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185321 5267 Panicoideae View MSA
124578689 5269 Grass View MSA
122050648 5273 Angiosperm View MSA
121351416 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.898        
cufflinks 1.983       Low
cufflinks 2.357       Low
cufflinks 5.047       Low
cufflinks 19.274     High High
cufflinks 13.913     High  
cufflinks 16.141     High  
cufflinks 10.793     High  
cufflinks 17.138     High  
cufflinks 15.923     High  
cufflinks 6.778        
cufflinks 8.275        
cufflinks 13.302     High  
cufflinks 8.076        
cufflinks 11.04        
cufflinks 3.328       Low
cufflinks 14.846     High  
cufflinks 16.97     High  
cufflinks 8.032        
cufflinks 15.863     High  
cufflinks 24.578     High High
cufflinks 8.387        
cufflinks 7.929        
cufflinks 7.604        
cufflinks 3.399       Low
cufflinks 2.638       Low
cufflinks 7.01        
cufflinks 6.51        
cufflinks 26.208     High High
cufflinks 14.4     High  

0 Strain