Gene : Sobic.007G051900 S. bicolor v3.1.1
Defline:  (1 of 437) PF13041 - PPR repeat family (PPR_2) Genomic Order:  547
Name:  ? Sobic.007G051900 Secondary Identifier:  ? PAC:37936288
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G051900 0.5kb upstream 0.5kb upstream 3559 true Chr07: 5302096-5305654 Sorghum bicolor
Sobic.007G051900 0.5kb upstream 0.5kb upstream 500 false Chr07: 5302096-5302595 Sorghum bicolor
Sobic.007G051900 0.5kb downstream 0.5kb downstream 3559 true Chr07: 5302596-5306154 Sorghum bicolor
Sobic.007G051900 0.5kb downstream 0.5kb downstream 500 false Chr07: 5305655-5306154 Sorghum bicolor
Sobic.007G051900 1.0kb upstream 1.0kb upstream 4059 true Chr07: 5301596-5305654 Sorghum bicolor
Sobic.007G051900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 5301596-5302595 Sorghum bicolor
Sobic.007G051900 1.0kb downstream 1.0kb downstream 4059 true Chr07: 5302596-5306654 Sorghum bicolor
Sobic.007G051900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 5305655-5306654 Sorghum bicolor
Sobic.007G051900 2.0kb upstream 2.0kb upstream 5059 true Chr07: 5300596-5305654 Sorghum bicolor
Sobic.007G051900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 5300596-5302595 Sorghum bicolor
Sobic.007G051900 2.0kb downstream 2.0kb downstream 5059 true Chr07: 5302596-5307654 Sorghum bicolor
Sobic.007G051900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 5305655-5307654 Sorghum bicolor
Sobic.007G051900 5.0kb upstream 5.0kb upstream 8059 true Chr07: 5297596-5305654 Sorghum bicolor
Sobic.007G051900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 5297596-5302595 Sorghum bicolor
Sobic.007G051900 5.0kb downstream 5.0kb downstream 8059 true Chr07: 5302596-5310654 Sorghum bicolor
Sobic.007G051900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 5305655-5310654 Sorghum bicolor
Sobic.007G051900 10.0kb upstream 10.0kb upstream 13059 true Chr07: 5292596-5305654 Sorghum bicolor
Sobic.007G051900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 5292596-5302595 Sorghum bicolor
Sobic.007G051900 10.0kb downstream 10.0kb downstream 13059 true Chr07: 5302596-5315654 Sorghum bicolor
Sobic.007G051900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 5305655-5315654 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183049 5267 Panicoideae View MSA
124577678 5269 Grass View MSA
122046804 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.132       Low
cufflinks 1.153       Low
cufflinks 12.338     High High
cufflinks 3.435        
cufflinks 12.226       High
cufflinks 2.354        
cufflinks 1.771        
cufflinks 1.079       Low
cufflinks 3.838        
cufflinks 3.413        
cufflinks 4.123        
cufflinks 2.343        
cufflinks 5.791        
cufflinks 1.629        
cufflinks 3.918        
cufflinks 1.223       Low
cufflinks 1.584        
cufflinks 1.784        
cufflinks 7.617        
cufflinks 2.121        
cufflinks 5.537        
cufflinks 1.748        
cufflinks 2.034        
cufflinks 1.966        
cufflinks 0.744       Low
cufflinks 0.67       Low
cufflinks 12.132     High High
cufflinks 0.763       Low
cufflinks 4.429        
cufflinks 3.616        

0 Strain