Gene : Sobic.007G043400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10683//PTHR10683:SF10 - TRANSALDOLASE // TRANSALDOLASE-LIKE PROTEIN Genomic Order:  454
Name:  ? Sobic.007G043400 Secondary Identifier:  ? PAC:37935432
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor NONOXIPENT-PWY Sorghum bicolor pathologic  
Sbicolor PENTOSE-P-PWY Sorghum bicolor pathologic  
Sbicolor PWY-5723 Sorghum bicolor pathologic  

Genomics

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Expression

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G043400 0.5kb upstream 0.5kb upstream 5892 true Chr07: 4337239-4343130 Sorghum bicolor
Sobic.007G043400 0.5kb upstream 0.5kb upstream 500 false Chr07: 4342631-4343130 Sorghum bicolor
Sobic.007G043400 0.5kb downstream 0.5kb downstream 5892 true Chr07: 4336739-4342630 Sorghum bicolor
Sobic.007G043400 0.5kb downstream 0.5kb downstream 500 false Chr07: 4336739-4337238 Sorghum bicolor
Sobic.007G043400 1.0kb upstream 1.0kb upstream 6392 true Chr07: 4337239-4343630 Sorghum bicolor
Sobic.007G043400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4342631-4343630 Sorghum bicolor
Sobic.007G043400 1.0kb downstream 1.0kb downstream 6392 true Chr07: 4336239-4342630 Sorghum bicolor
Sobic.007G043400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4336239-4337238 Sorghum bicolor
Sobic.007G043400 2.0kb upstream 2.0kb upstream 7392 true Chr07: 4337239-4344630 Sorghum bicolor
Sobic.007G043400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4342631-4344630 Sorghum bicolor
Sobic.007G043400 2.0kb downstream 2.0kb downstream 7392 true Chr07: 4335239-4342630 Sorghum bicolor
Sobic.007G043400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4335239-4337238 Sorghum bicolor
Sobic.007G043400 5.0kb upstream 5.0kb upstream 10392 true Chr07: 4337239-4347630 Sorghum bicolor
Sobic.007G043400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4342631-4347630 Sorghum bicolor
Sobic.007G043400 5.0kb downstream 5.0kb downstream 10392 true Chr07: 4332239-4342630 Sorghum bicolor
Sobic.007G043400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4332239-4337238 Sorghum bicolor
Sobic.007G043400 10.0kb upstream 10.0kb upstream 15392 true Chr07: 4337239-4352630 Sorghum bicolor
Sobic.007G043400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4342631-4352630 Sorghum bicolor
Sobic.007G043400 10.0kb downstream 10.0kb downstream 15392 true Chr07: 4327239-4342630 Sorghum bicolor
Sobic.007G043400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4327239-4337238 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175204 5267 Panicoideae View MSA
124569843 5269 Grass View MSA
122043979 5273 Angiosperm View MSA
121346789 5274 Embryophyte View MSA
123424119 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.346        
cufflinks 1.658       Low
cufflinks 6.28        
cufflinks 6.988        
cufflinks 22.455     High  
cufflinks 9.304        
cufflinks 12.391     High  
cufflinks 6.771        
cufflinks 12.931     High  
cufflinks 12.118     High  
cufflinks 24.628     High  
cufflinks 15.96     High  
cufflinks 10.667        
cufflinks 21.668     High  
cufflinks 16.332     High  
cufflinks 4.583       Low
cufflinks 12.106     High  
cufflinks 13.29     High  
cufflinks 5.443        
cufflinks 9.416        
cufflinks 21.098     High  
cufflinks 39.805     High High
cufflinks 22.375     High  
cufflinks 24.686     High  
cufflinks 1.229       Low
cufflinks 0.925       Low
cufflinks 27.093     High High
cufflinks 6.96        
cufflinks 16.462     High  
cufflinks 21.41     High  

0 Strain