Gene : Sobic.007G043600 S. bicolor v3.1.1
Defline:  (1 of 2) K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) Genomic Order:  456
Name:  ? Sobic.007G043600 Secondary Identifier:  ? PAC:37936575
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G043600 0.5kb upstream 0.5kb upstream 6455 true Chr07: 4354455-4360909 Sorghum bicolor
Sobic.007G043600 0.5kb upstream 0.5kb upstream 500 false Chr07: 4354455-4354954 Sorghum bicolor
Sobic.007G043600 0.5kb downstream 0.5kb downstream 6455 true Chr07: 4354955-4361409 Sorghum bicolor
Sobic.007G043600 0.5kb downstream 0.5kb downstream 500 false Chr07: 4360910-4361409 Sorghum bicolor
Sobic.007G043600 1.0kb upstream 1.0kb upstream 6955 true Chr07: 4353955-4360909 Sorghum bicolor
Sobic.007G043600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4353955-4354954 Sorghum bicolor
Sobic.007G043600 1.0kb downstream 1.0kb downstream 6955 true Chr07: 4354955-4361909 Sorghum bicolor
Sobic.007G043600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4360910-4361909 Sorghum bicolor
Sobic.007G043600 2.0kb upstream 2.0kb upstream 7955 true Chr07: 4352955-4360909 Sorghum bicolor
Sobic.007G043600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4352955-4354954 Sorghum bicolor
Sobic.007G043600 2.0kb downstream 2.0kb downstream 7955 true Chr07: 4354955-4362909 Sorghum bicolor
Sobic.007G043600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4360910-4362909 Sorghum bicolor
Sobic.007G043600 5.0kb upstream 5.0kb upstream 10955 true Chr07: 4349955-4360909 Sorghum bicolor
Sobic.007G043600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4349955-4354954 Sorghum bicolor
Sobic.007G043600 5.0kb downstream 5.0kb downstream 10955 true Chr07: 4354955-4365909 Sorghum bicolor
Sobic.007G043600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4360910-4365909 Sorghum bicolor
Sobic.007G043600 10.0kb upstream 10.0kb upstream 15955 true Chr07: 4344955-4360909 Sorghum bicolor
Sobic.007G043600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4344955-4354954 Sorghum bicolor
Sobic.007G043600 10.0kb downstream 10.0kb downstream 15955 true Chr07: 4354955-4370909 Sorghum bicolor
Sobic.007G043600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4360910-4370909 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193782 5267 Panicoideae View MSA
124581049 5269 Grass View MSA
122043046 5273 Angiosperm View MSA
121347447 5274 Embryophyte View MSA
123425045 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.038     High High
cufflinks 2.992       Low
cufflinks 4.724        
cufflinks 9.132        
cufflinks 6.402        
cufflinks 8.223        
cufflinks 7.685        
cufflinks 3.776       Low
cufflinks 6.957        
cufflinks 7.603        
cufflinks 6.102        
cufflinks 6.316        
cufflinks 6.472        
cufflinks 7.06        
cufflinks 6.676        
cufflinks 5.773        
cufflinks 8.321        
cufflinks 7.943        
cufflinks 3.685       Low
cufflinks 8.742        
cufflinks 15.133     High High
cufflinks 9.122        
cufflinks 7.021        
cufflinks 8.309        
cufflinks 3.42       Low
cufflinks 2.454       Low
cufflinks 4.728        
cufflinks 29.069     High High
cufflinks 6.115        
cufflinks 8.636        

0 Strain