Gene : Sobic.007G078200 S. bicolor v3.1.1

Defline:  (1 of 1) PTHR11764//PTHR11764:SF17 - LANOSTEROL SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  816
Name:  ? Sobic.007G078200 Secondary Identifier:  ? PAC:37935500

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-2541 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G078200 0.5kb upstream 0.5kb upstream 9340 true Chr07: 9149829-9159168 Sorghum bicolor
Sobic.007G078200 0.5kb upstream 0.5kb upstream 500 false Chr07: 9149829-9150328 Sorghum bicolor
Sobic.007G078200 0.5kb downstream 0.5kb downstream 9340 true Chr07: 9150329-9159668 Sorghum bicolor
Sobic.007G078200 0.5kb downstream 0.5kb downstream 500 false Chr07: 9159169-9159668 Sorghum bicolor
Sobic.007G078200 1.0kb upstream 1.0kb upstream 9840 true Chr07: 9149329-9159168 Sorghum bicolor
Sobic.007G078200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 9149329-9150328 Sorghum bicolor
Sobic.007G078200 1.0kb downstream 1.0kb downstream 9840 true Chr07: 9150329-9160168 Sorghum bicolor
Sobic.007G078200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 9159169-9160168 Sorghum bicolor
Sobic.007G078200 2.0kb upstream 2.0kb upstream 10840 true Chr07: 9148329-9159168 Sorghum bicolor
Sobic.007G078200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 9148329-9150328 Sorghum bicolor
Sobic.007G078200 2.0kb downstream 2.0kb downstream 10840 true Chr07: 9150329-9161168 Sorghum bicolor
Sobic.007G078200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 9159169-9161168 Sorghum bicolor
Sobic.007G078200 5.0kb upstream 5.0kb upstream 13840 true Chr07: 9145329-9159168 Sorghum bicolor
Sobic.007G078200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 9145329-9150328 Sorghum bicolor
Sobic.007G078200 5.0kb downstream 5.0kb downstream 13840 true Chr07: 9150329-9164168 Sorghum bicolor
Sobic.007G078200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 9159169-9164168 Sorghum bicolor
Sobic.007G078200 10.0kb upstream 10.0kb upstream 18840 true Chr07: 9140329-9159168 Sorghum bicolor
Sobic.007G078200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 9140329-9150328 Sorghum bicolor
Sobic.007G078200 10.0kb downstream 10.0kb downstream 18840 true Chr07: 9150329-9169168 Sorghum bicolor
Sobic.007G078200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 9159169-9169168 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028235 5273 Angiosperm View MSA
122181444 5267 Panicoideae View MSA
124581907 5269 Grass View MSA
121297756 5274 Embryophyte View MSA
123335781 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.007     Low  
cufflinks 0.009     Low  
cufflinks 0.179       High
cufflinks 0.09       High
cufflinks 0.006     Low  
cufflinks 0.004     Low  
cufflinks 0.007     Low  
cufflinks 0.005     Low  
cufflinks 0.012     Low  
cufflinks 0.004     Low  
cufflinks 0.072     Low High
cufflinks 0.006     Low  
cufflinks 0.171       High
cufflinks 0.215       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.164       High
cufflinks 0.015     Low  
cufflinks 0.005     Low  
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.005     Low  
cufflinks 0.017     Low  
cufflinks 0.015     Low  
cufflinks 0.352       High
cufflinks 0.006     Low  

0 Strain