Gene : Sobic.007G107700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR31846:SF10 - CHLOROPLASTIC GROUP IIA INTRON SPLICING FACILITATOR CRS1, CHLOROPLASTIC Genomic Order:  1129
Name:  ? Sobic.007G107700 Secondary Identifier:  ? PAC:37934171
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G107700 0.5kb upstream 0.5kb upstream 7809 true Chr07: 38919712-38927520 Sorghum bicolor
Sobic.007G107700 0.5kb upstream 0.5kb upstream 500 false Chr07: 38919712-38920211 Sorghum bicolor
Sobic.007G107700 0.5kb downstream 0.5kb downstream 7809 true Chr07: 38920212-38928020 Sorghum bicolor
Sobic.007G107700 0.5kb downstream 0.5kb downstream 500 false Chr07: 38927521-38928020 Sorghum bicolor
Sobic.007G107700 1.0kb upstream 1.0kb upstream 8309 true Chr07: 38919212-38927520 Sorghum bicolor
Sobic.007G107700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 38919212-38920211 Sorghum bicolor
Sobic.007G107700 1.0kb downstream 1.0kb downstream 8309 true Chr07: 38920212-38928520 Sorghum bicolor
Sobic.007G107700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 38927521-38928520 Sorghum bicolor
Sobic.007G107700 2.0kb upstream 2.0kb upstream 9309 true Chr07: 38918212-38927520 Sorghum bicolor
Sobic.007G107700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 38918212-38920211 Sorghum bicolor
Sobic.007G107700 2.0kb downstream 2.0kb downstream 9309 true Chr07: 38920212-38929520 Sorghum bicolor
Sobic.007G107700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 38927521-38929520 Sorghum bicolor
Sobic.007G107700 5.0kb upstream 5.0kb upstream 12309 true Chr07: 38915212-38927520 Sorghum bicolor
Sobic.007G107700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 38915212-38920211 Sorghum bicolor
Sobic.007G107700 5.0kb downstream 5.0kb downstream 12309 true Chr07: 38920212-38932520 Sorghum bicolor
Sobic.007G107700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 38927521-38932520 Sorghum bicolor
Sobic.007G107700 10.0kb upstream 10.0kb upstream 17309 true Chr07: 38910212-38927520 Sorghum bicolor
Sobic.007G107700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 38910212-38920211 Sorghum bicolor
Sobic.007G107700 10.0kb downstream 10.0kb downstream 17309 true Chr07: 38920212-38937520 Sorghum bicolor
Sobic.007G107700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 38927521-38937520 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184128 5267 Panicoideae View MSA
124569221 5269 Grass View MSA
122046600 5273 Angiosperm View MSA
121310632 5274 Embryophyte View MSA
123348066 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.664       Low
cufflinks 14.929     High High
cufflinks 12.572     High High
cufflinks 11.168       High
cufflinks 3.806        
cufflinks 6.008        
cufflinks 4.946        
cufflinks 10.908     High High
cufflinks 2.642        
cufflinks 2.6        
cufflinks 0.765       Low
cufflinks 0.854       Low
cufflinks 1.997        
cufflinks 0.465       Low
cufflinks 4.365        
cufflinks 12.023     High High
cufflinks 4.823        
cufflinks 6.21        
cufflinks 12.182     High High
cufflinks 5.635        
cufflinks 3.342        
cufflinks 0.544       Low
cufflinks 0.636       Low
cufflinks 0.604       Low
cufflinks 13.861     High High
cufflinks 13.444     High High
cufflinks 1.463        
cufflinks 0.382       Low
cufflinks 9.564       High
cufflinks 3.976        

0 Strain