Gene : Sobic.007G106800 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR22536//PTHR22536:SF2 - LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1120
Name:  ? Sobic.007G106800 Secondary Identifier:  ? PAC:37936574
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G106800 0.5kb upstream 0.5kb upstream 12053 true Chr07: 38348746-38360798 Sorghum bicolor
Sobic.007G106800 0.5kb upstream 0.5kb upstream 500 false Chr07: 38348746-38349245 Sorghum bicolor
Sobic.007G106800 0.5kb downstream 0.5kb downstream 12053 true Chr07: 38349246-38361298 Sorghum bicolor
Sobic.007G106800 0.5kb downstream 0.5kb downstream 500 false Chr07: 38360799-38361298 Sorghum bicolor
Sobic.007G106800 1.0kb upstream 1.0kb upstream 12553 true Chr07: 38348246-38360798 Sorghum bicolor
Sobic.007G106800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 38348246-38349245 Sorghum bicolor
Sobic.007G106800 1.0kb downstream 1.0kb downstream 12553 true Chr07: 38349246-38361798 Sorghum bicolor
Sobic.007G106800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 38360799-38361798 Sorghum bicolor
Sobic.007G106800 2.0kb upstream 2.0kb upstream 13553 true Chr07: 38347246-38360798 Sorghum bicolor
Sobic.007G106800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 38347246-38349245 Sorghum bicolor
Sobic.007G106800 2.0kb downstream 2.0kb downstream 13553 true Chr07: 38349246-38362798 Sorghum bicolor
Sobic.007G106800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 38360799-38362798 Sorghum bicolor
Sobic.007G106800 5.0kb upstream 5.0kb upstream 16553 true Chr07: 38344246-38360798 Sorghum bicolor
Sobic.007G106800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 38344246-38349245 Sorghum bicolor
Sobic.007G106800 5.0kb downstream 5.0kb downstream 16553 true Chr07: 38349246-38365798 Sorghum bicolor
Sobic.007G106800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 38360799-38365798 Sorghum bicolor
Sobic.007G106800 10.0kb upstream 10.0kb upstream 21553 true Chr07: 38339246-38360798 Sorghum bicolor
Sobic.007G106800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 38339246-38349245 Sorghum bicolor
Sobic.007G106800 10.0kb downstream 10.0kb downstream 21553 true Chr07: 38349246-38370798 Sorghum bicolor
Sobic.007G106800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 38360799-38370798 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186008 5267 Panicoideae View MSA
124584109 5269 Grass View MSA
122041858 5273 Angiosperm View MSA
121345817 5274 Embryophyte View MSA
123425736 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.037        
cufflinks 7.519     High  
cufflinks 8.7       High
cufflinks 10.617       High
cufflinks 3.906       Low
cufflinks 15.399     High High
cufflinks 6.268        
cufflinks 4.65        
cufflinks 9.323       High
cufflinks 8.878       High
cufflinks 3.82       Low
cufflinks 5.75        
cufflinks 8.591       High
cufflinks 5.083        
cufflinks 6.755        
cufflinks 8.133        
cufflinks 6.476        
cufflinks 6.779        
cufflinks 9.638       High
cufflinks 8.8       High
cufflinks 4.673        
cufflinks 4.665        
cufflinks 5.322        
cufflinks 4.523        
cufflinks 7.996        
cufflinks 6.461     High  
cufflinks 4.229       Low
cufflinks 5.386        
cufflinks 5.262        
cufflinks 5.654        

0 Strain