Gene : Sobic.007G095200 S. bicolor v3.1.1
Defline:  (1 of 1) K18798 - protein AFG1 (AFG1, LACE1) Genomic Order:  1005
Name:  ? Sobic.007G095200 Secondary Identifier:  ? PAC:37936554
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ANAEROFRUCAT-PWY Sorghum bicolor pathologic  
Sbicolor ANAGLYCOLYSIS-PWY Sorghum bicolor pathologic  
Sbicolor GLUCOSE1PMETAB-PWY Sorghum bicolor pathologic  
Sbicolor PWY-621 Sorghum bicolor pathologic  
Sbicolor PWY-7238 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G095200 0.5kb upstream 0.5kb upstream 6082 true Chr07: 17638274-17644355 Sorghum bicolor
Sobic.007G095200 0.5kb upstream 0.5kb upstream 500 false Chr07: 17638274-17638773 Sorghum bicolor
Sobic.007G095200 0.5kb downstream 0.5kb downstream 6082 true Chr07: 17638774-17644855 Sorghum bicolor
Sobic.007G095200 0.5kb downstream 0.5kb downstream 500 false Chr07: 17644356-17644855 Sorghum bicolor
Sobic.007G095200 1.0kb upstream 1.0kb upstream 6582 true Chr07: 17637774-17644355 Sorghum bicolor
Sobic.007G095200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 17637774-17638773 Sorghum bicolor
Sobic.007G095200 1.0kb downstream 1.0kb downstream 6582 true Chr07: 17638774-17645355 Sorghum bicolor
Sobic.007G095200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 17644356-17645355 Sorghum bicolor
Sobic.007G095200 2.0kb upstream 2.0kb upstream 7582 true Chr07: 17636774-17644355 Sorghum bicolor
Sobic.007G095200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 17636774-17638773 Sorghum bicolor
Sobic.007G095200 2.0kb downstream 2.0kb downstream 7582 true Chr07: 17638774-17646355 Sorghum bicolor
Sobic.007G095200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 17644356-17646355 Sorghum bicolor
Sobic.007G095200 5.0kb upstream 5.0kb upstream 10582 true Chr07: 17633774-17644355 Sorghum bicolor
Sobic.007G095200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 17633774-17638773 Sorghum bicolor
Sobic.007G095200 5.0kb downstream 5.0kb downstream 10582 true Chr07: 17638774-17649355 Sorghum bicolor
Sobic.007G095200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 17644356-17649355 Sorghum bicolor
Sobic.007G095200 10.0kb upstream 10.0kb upstream 15582 true Chr07: 17628774-17644355 Sorghum bicolor
Sobic.007G095200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 17628774-17638773 Sorghum bicolor
Sobic.007G095200 10.0kb downstream 10.0kb downstream 15582 true Chr07: 17638774-17654355 Sorghum bicolor
Sobic.007G095200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 17644356-17654355 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122172992 5267 Panicoideae View MSA
124463802 5269 Grass View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.749       Low
cufflinks 2.61       Low
cufflinks 5.829        
cufflinks 10.31        
cufflinks 3.056        
cufflinks 13.725     High High
cufflinks 5.082        
cufflinks 4.264        
cufflinks 22.23     High High
cufflinks 16.994     High High
cufflinks 6.355        
cufflinks 12.037     High High
cufflinks 16.588     High High
cufflinks 4.092        
cufflinks 8.864        
cufflinks 4.065        
cufflinks 4.117        
cufflinks 4.201        
cufflinks 4.592        
cufflinks 8.371        
cufflinks 6.417        
cufflinks 3.108        
cufflinks 6.352        
cufflinks 5.841        
cufflinks 4.048        
cufflinks 3.112        
cufflinks 8.169        
cufflinks 8.434        
cufflinks 3.772        
cufflinks 6.369        

0 Strain