Gene : Sobic.007G092200 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.3.2 - Aspartate carbamoyltransferase / Carbamylaspartotranskinase Genomic Order:  976
Name:  ? Sobic.007G092200 Secondary Identifier:  ? PAC:37935201
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY0-162 Sorghum bicolor pathologic  
Sbicolor PWY-5686 Sorghum bicolor pathologic  
Sbicolor PWY-7211 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G092200 0.5kb upstream 0.5kb upstream 6728 true Chr07: 15652822-15659549 Sorghum bicolor
Sobic.007G092200 0.5kb upstream 0.5kb upstream 500 false Chr07: 15652822-15653321 Sorghum bicolor
Sobic.007G092200 0.5kb downstream 0.5kb downstream 6728 true Chr07: 15653322-15660049 Sorghum bicolor
Sobic.007G092200 0.5kb downstream 0.5kb downstream 500 false Chr07: 15659550-15660049 Sorghum bicolor
Sobic.007G092200 1.0kb upstream 1.0kb upstream 7228 true Chr07: 15652322-15659549 Sorghum bicolor
Sobic.007G092200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 15652322-15653321 Sorghum bicolor
Sobic.007G092200 1.0kb downstream 1.0kb downstream 7228 true Chr07: 15653322-15660549 Sorghum bicolor
Sobic.007G092200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 15659550-15660549 Sorghum bicolor
Sobic.007G092200 2.0kb upstream 2.0kb upstream 8228 true Chr07: 15651322-15659549 Sorghum bicolor
Sobic.007G092200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 15651322-15653321 Sorghum bicolor
Sobic.007G092200 2.0kb downstream 2.0kb downstream 8228 true Chr07: 15653322-15661549 Sorghum bicolor
Sobic.007G092200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 15659550-15661549 Sorghum bicolor
Sobic.007G092200 5.0kb upstream 5.0kb upstream 11228 true Chr07: 15648322-15659549 Sorghum bicolor
Sobic.007G092200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 15648322-15653321 Sorghum bicolor
Sobic.007G092200 5.0kb downstream 5.0kb downstream 11228 true Chr07: 15653322-15664549 Sorghum bicolor
Sobic.007G092200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 15659550-15664549 Sorghum bicolor
Sobic.007G092200 10.0kb upstream 10.0kb upstream 16228 true Chr07: 15643322-15659549 Sorghum bicolor
Sobic.007G092200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 15643322-15653321 Sorghum bicolor
Sobic.007G092200 10.0kb downstream 10.0kb downstream 16228 true Chr07: 15653322-15669549 Sorghum bicolor
Sobic.007G092200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 15659550-15669549 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191667 5267 Panicoideae View MSA
124577983 5269 Grass View MSA
122047002 5273 Angiosperm View MSA
121345349 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.756       High
cufflinks 0.189       Low
cufflinks 0.296       Low
cufflinks 0.638        
cufflinks 1.413        
cufflinks 0.957        
cufflinks 1.007        
cufflinks 0.39       Low
cufflinks 1.131        
cufflinks 1.363        
cufflinks 1.056        
cufflinks 0.751        
cufflinks 0.799        
cufflinks 0.99        
cufflinks 0.77        
cufflinks 0.246       Low
cufflinks 1.014        
cufflinks 1.244        
cufflinks 0.228       Low
cufflinks 0.874        
cufflinks 2.022       High
cufflinks 1.399        
cufflinks 1.334        
cufflinks 1.285        
cufflinks 0.167       Low
cufflinks 0.238       Low
cufflinks 0.601        
cufflinks 3.812       High
cufflinks 0.821        
cufflinks 1.195        

0 Strain