Gene : Sobic.007G151100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR22893//PTHR22893:SF67 - NADH OXIDOREDUCTASE-RELATED // 12-OXOPHYTODIENOATE REDUCTASE 3 Genomic Order:  1589
Name:  ? Sobic.007G151100 Secondary Identifier:  ? PAC:37935000
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-735 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G151100 0.5kb upstream 0.5kb upstream 4942 true Chr07: 58294702-58299643 Sorghum bicolor
Sobic.007G151100 0.5kb upstream 0.5kb upstream 500 false Chr07: 58294702-58295201 Sorghum bicolor
Sobic.007G151100 0.5kb downstream 0.5kb downstream 4942 true Chr07: 58295202-58300143 Sorghum bicolor
Sobic.007G151100 0.5kb downstream 0.5kb downstream 500 false Chr07: 58299644-58300143 Sorghum bicolor
Sobic.007G151100 1.0kb upstream 1.0kb upstream 5442 true Chr07: 58294202-58299643 Sorghum bicolor
Sobic.007G151100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 58294202-58295201 Sorghum bicolor
Sobic.007G151100 1.0kb downstream 1.0kb downstream 5442 true Chr07: 58295202-58300643 Sorghum bicolor
Sobic.007G151100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 58299644-58300643 Sorghum bicolor
Sobic.007G151100 2.0kb upstream 2.0kb upstream 6442 true Chr07: 58293202-58299643 Sorghum bicolor
Sobic.007G151100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 58293202-58295201 Sorghum bicolor
Sobic.007G151100 2.0kb downstream 2.0kb downstream 6442 true Chr07: 58295202-58301643 Sorghum bicolor
Sobic.007G151100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 58299644-58301643 Sorghum bicolor
Sobic.007G151100 5.0kb upstream 5.0kb upstream 9442 true Chr07: 58290202-58299643 Sorghum bicolor
Sobic.007G151100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 58290202-58295201 Sorghum bicolor
Sobic.007G151100 5.0kb downstream 5.0kb downstream 9442 true Chr07: 58295202-58304643 Sorghum bicolor
Sobic.007G151100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 58299644-58304643 Sorghum bicolor
Sobic.007G151100 10.0kb upstream 10.0kb upstream 14442 true Chr07: 58285202-58299643 Sorghum bicolor
Sobic.007G151100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 58285202-58295201 Sorghum bicolor
Sobic.007G151100 10.0kb downstream 10.0kb downstream 14442 true Chr07: 58295202-58309643 Sorghum bicolor
Sobic.007G151100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 58299644-58309643 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192557 5267 Panicoideae View MSA
124576769 5269 Grass View MSA
122045758 5273 Angiosperm View MSA
121351640 5274 Embryophyte View MSA
123428487 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.548        
cufflinks 2.005       Low
cufflinks 14.815     High  
cufflinks 11.245        
cufflinks 28.449     High High
cufflinks 16.751     High  
cufflinks 3.464       Low
cufflinks 4.205        
cufflinks 17.349     High  
cufflinks 18.366     High  
cufflinks 21.272     High  
cufflinks 9.783        
cufflinks 19.505     High  
cufflinks 10.674        
cufflinks 13.161     High  
cufflinks 3.092       Low
cufflinks 3.219       Low
cufflinks 2.619       Low
cufflinks 19.444     High  
cufflinks 4.868        
cufflinks 1.218       Low
cufflinks 16.104     High  
cufflinks 9.093        
cufflinks 9.379        
cufflinks 2.301       Low
cufflinks 2.257       Low
cufflinks 19.655     High  
cufflinks 2.638       Low
cufflinks 6.711        
cufflinks 9.561        

0 Strain