Gene : Sobic.007G120500 S. bicolor v3.1.1
Defline:  (1 of 1) K12479 - vacuolar protein sorting-associated protein 45 (VPS45) Genomic Order:  1265
Name:  ? Sobic.007G120500 Secondary Identifier:  ? PAC:37936019
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G120500 0.5kb upstream 0.5kb upstream 6999 true Chr07: 52088142-52095140 Sorghum bicolor
Sobic.007G120500 0.5kb upstream 0.5kb upstream 500 false Chr07: 52088142-52088641 Sorghum bicolor
Sobic.007G120500 0.5kb downstream 0.5kb downstream 6999 true Chr07: 52088642-52095640 Sorghum bicolor
Sobic.007G120500 0.5kb downstream 0.5kb downstream 500 false Chr07: 52095141-52095640 Sorghum bicolor
Sobic.007G120500 1.0kb upstream 1.0kb upstream 7499 true Chr07: 52087642-52095140 Sorghum bicolor
Sobic.007G120500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 52087642-52088641 Sorghum bicolor
Sobic.007G120500 1.0kb downstream 1.0kb downstream 7499 true Chr07: 52088642-52096140 Sorghum bicolor
Sobic.007G120500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 52095141-52096140 Sorghum bicolor
Sobic.007G120500 2.0kb upstream 2.0kb upstream 8499 true Chr07: 52086642-52095140 Sorghum bicolor
Sobic.007G120500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 52086642-52088641 Sorghum bicolor
Sobic.007G120500 2.0kb downstream 2.0kb downstream 8499 true Chr07: 52088642-52097140 Sorghum bicolor
Sobic.007G120500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 52095141-52097140 Sorghum bicolor
Sobic.007G120500 5.0kb upstream 5.0kb upstream 11499 true Chr07: 52083642-52095140 Sorghum bicolor
Sobic.007G120500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 52083642-52088641 Sorghum bicolor
Sobic.007G120500 5.0kb downstream 5.0kb downstream 11499 true Chr07: 52088642-52100140 Sorghum bicolor
Sobic.007G120500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 52095141-52100140 Sorghum bicolor
Sobic.007G120500 10.0kb upstream 10.0kb upstream 16499 true Chr07: 52078642-52095140 Sorghum bicolor
Sobic.007G120500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 52078642-52088641 Sorghum bicolor
Sobic.007G120500 10.0kb downstream 10.0kb downstream 16499 true Chr07: 52088642-52105140 Sorghum bicolor
Sobic.007G120500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 52095141-52105140 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186231 5267 Panicoideae View MSA
124576173 5269 Grass View MSA
122044775 5273 Angiosperm View MSA
121347331 5274 Embryophyte View MSA
123424934 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.926       Low
cufflinks 1.506       Low
cufflinks 5.571        
cufflinks 9.048        
cufflinks 9.357        
cufflinks 6.778        
cufflinks 5.334        
cufflinks 3.193       Low
cufflinks 12.815     High High
cufflinks 11.341        
cufflinks 9.676        
cufflinks 10.999        
cufflinks 8.243        
cufflinks 9.505        
cufflinks 8.427        
cufflinks 3.492       Low
cufflinks 5.634        
cufflinks 5.746        
cufflinks 4.134        
cufflinks 8.197        
cufflinks 10.232        
cufflinks 9.952        
cufflinks 10.125        
cufflinks 10.191        
cufflinks 3.944       Low
cufflinks 1.831       Low
cufflinks 10.653        
cufflinks 2.761       Low
cufflinks 5.443        
cufflinks 9.072        

0 Strain