Gene : Sobic.007G178200 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR10585//PTHR10585:SF35 - ER LUMEN PROTEIN RETAINING RECEPTOR // SUBFAMILY NOT NAMED Genomic Order:  1867
Name:  ? Sobic.007G178200 Secondary Identifier:  ? PAC:37936230
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G178200 0.5kb upstream 0.5kb upstream 5168 true Chr07: 61143540-61148707 Sorghum bicolor
Sobic.007G178200 0.5kb upstream 0.5kb upstream 500 false Chr07: 61148208-61148707 Sorghum bicolor
Sobic.007G178200 0.5kb downstream 0.5kb downstream 5168 true Chr07: 61143040-61148207 Sorghum bicolor
Sobic.007G178200 0.5kb downstream 0.5kb downstream 500 false Chr07: 61143040-61143539 Sorghum bicolor
Sobic.007G178200 1.0kb upstream 1.0kb upstream 5668 true Chr07: 61143540-61149207 Sorghum bicolor
Sobic.007G178200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 61148208-61149207 Sorghum bicolor
Sobic.007G178200 1.0kb downstream 1.0kb downstream 5668 true Chr07: 61142540-61148207 Sorghum bicolor
Sobic.007G178200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 61142540-61143539 Sorghum bicolor
Sobic.007G178200 2.0kb upstream 2.0kb upstream 6668 true Chr07: 61143540-61150207 Sorghum bicolor
Sobic.007G178200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 61148208-61150207 Sorghum bicolor
Sobic.007G178200 2.0kb downstream 2.0kb downstream 6668 true Chr07: 61141540-61148207 Sorghum bicolor
Sobic.007G178200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 61141540-61143539 Sorghum bicolor
Sobic.007G178200 5.0kb upstream 5.0kb upstream 9668 true Chr07: 61143540-61153207 Sorghum bicolor
Sobic.007G178200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 61148208-61153207 Sorghum bicolor
Sobic.007G178200 5.0kb downstream 5.0kb downstream 9668 true Chr07: 61138540-61148207 Sorghum bicolor
Sobic.007G178200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 61138540-61143539 Sorghum bicolor
Sobic.007G178200 10.0kb upstream 10.0kb upstream 14668 true Chr07: 61143540-61158207 Sorghum bicolor
Sobic.007G178200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 61148208-61158207 Sorghum bicolor
Sobic.007G178200 10.0kb downstream 10.0kb downstream 14668 true Chr07: 61133540-61148207 Sorghum bicolor
Sobic.007G178200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 61133540-61143539 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181182 5267 Panicoideae View MSA
124585975 5269 Grass View MSA
122049823 5273 Angiosperm View MSA
121349491 5274 Embryophyte View MSA
123426417 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.833     High  
cufflinks 4.747       Low
cufflinks 41.808     High High
cufflinks 42.706     High High
cufflinks 11.276        
cufflinks 18.449     High  
cufflinks 9.861        
cufflinks 9.294     High  
cufflinks 20.352     High  
cufflinks 16.967     High  
cufflinks 13.321     High  
cufflinks 15.319     High  
cufflinks 26.221     High High
cufflinks 15.868     High  
cufflinks 20.331     High  
cufflinks 10.935     High  
cufflinks 10.808        
cufflinks 10.185        
cufflinks 16.545     High  
cufflinks 13.769     High  
cufflinks 8.403       Low
cufflinks 12.921     High  
cufflinks 13.999     High  
cufflinks 13.335     High  
cufflinks 8.404       Low
cufflinks 5.195       Low
cufflinks 18.295     High  
cufflinks 13.695     High  
cufflinks 11.31        
cufflinks 14.618     High  

0 Strain