Gene : Sobic.007G171100 S. bicolor v3.1.1
Defline:  (1 of 1) K12736 - peptidylprolyl isomerase domain and WD repeat-containing protein 1 [EC:5.2.1.8] (PPWD1) Genomic Order:  1797
Name:  ? Sobic.007G171100 Secondary Identifier:  ? PAC:37934918
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G171100 0.5kb upstream 0.5kb upstream 6485 true Chr07: 60657008-60663492 Sorghum bicolor
Sobic.007G171100 0.5kb upstream 0.5kb upstream 500 false Chr07: 60662993-60663492 Sorghum bicolor
Sobic.007G171100 0.5kb downstream 0.5kb downstream 6485 true Chr07: 60656508-60662992 Sorghum bicolor
Sobic.007G171100 0.5kb downstream 0.5kb downstream 500 false Chr07: 60656508-60657007 Sorghum bicolor
Sobic.007G171100 1.0kb upstream 1.0kb upstream 6985 true Chr07: 60657008-60663992 Sorghum bicolor
Sobic.007G171100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 60662993-60663992 Sorghum bicolor
Sobic.007G171100 1.0kb downstream 1.0kb downstream 6985 true Chr07: 60656008-60662992 Sorghum bicolor
Sobic.007G171100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 60656008-60657007 Sorghum bicolor
Sobic.007G171100 2.0kb upstream 2.0kb upstream 7985 true Chr07: 60657008-60664992 Sorghum bicolor
Sobic.007G171100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 60662993-60664992 Sorghum bicolor
Sobic.007G171100 2.0kb downstream 2.0kb downstream 7985 true Chr07: 60655008-60662992 Sorghum bicolor
Sobic.007G171100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 60655008-60657007 Sorghum bicolor
Sobic.007G171100 5.0kb upstream 5.0kb upstream 10985 true Chr07: 60657008-60667992 Sorghum bicolor
Sobic.007G171100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 60662993-60667992 Sorghum bicolor
Sobic.007G171100 5.0kb downstream 5.0kb downstream 10985 true Chr07: 60652008-60662992 Sorghum bicolor
Sobic.007G171100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 60652008-60657007 Sorghum bicolor
Sobic.007G171100 10.0kb upstream 10.0kb upstream 15985 true Chr07: 60657008-60672992 Sorghum bicolor
Sobic.007G171100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 60662993-60672992 Sorghum bicolor
Sobic.007G171100 10.0kb downstream 10.0kb downstream 15985 true Chr07: 60647008-60662992 Sorghum bicolor
Sobic.007G171100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 60647008-60657007 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041059 5273 Angiosperm View MSA
122181626 5267 Panicoideae View MSA
124579764 5269 Grass View MSA
121344442 5274 Embryophyte View MSA
123425036 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.522       High
cufflinks 0.776       Low
cufflinks 2.003       Low
cufflinks 4.245        
cufflinks 5.08        
cufflinks 4.509        
cufflinks 3.516        
cufflinks 1.222       Low
cufflinks 6.134        
cufflinks 6.937       High
cufflinks 4.104        
cufflinks 4.968        
cufflinks 4.422        
cufflinks 4.115        
cufflinks 3.874        
cufflinks 2.008       Low
cufflinks 3.921        
cufflinks 4.01        
cufflinks 1.732       Low
cufflinks 4.435        
cufflinks 8.462       High
cufflinks 5.183        
cufflinks 5.142        
cufflinks 5.155        
cufflinks 1.553       Low
cufflinks 0.681       Low
cufflinks 4.245        
cufflinks 4.517        
cufflinks 2.761        
cufflinks 5.53        

0 Strain