Gene : Sobic.007G168300 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23083//PTHR23083:SF397 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED Genomic Order:  1770
Name:  ? Sobic.007G168300 Secondary Identifier:  ? PAC:37935596
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7437 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G168300 0.5kb upstream 0.5kb upstream 6786 true Chr07: 60318410-60325195 Sorghum bicolor
Sobic.007G168300 0.5kb upstream 0.5kb upstream 500 false Chr07: 60324696-60325195 Sorghum bicolor
Sobic.007G168300 0.5kb downstream 0.5kb downstream 6786 true Chr07: 60317910-60324695 Sorghum bicolor
Sobic.007G168300 0.5kb downstream 0.5kb downstream 500 false Chr07: 60317910-60318409 Sorghum bicolor
Sobic.007G168300 1.0kb upstream 1.0kb upstream 7286 true Chr07: 60318410-60325695 Sorghum bicolor
Sobic.007G168300 1.0kb upstream 1.0kb upstream 1000 false Chr07: 60324696-60325695 Sorghum bicolor
Sobic.007G168300 1.0kb downstream 1.0kb downstream 7286 true Chr07: 60317410-60324695 Sorghum bicolor
Sobic.007G168300 1.0kb downstream 1.0kb downstream 1000 false Chr07: 60317410-60318409 Sorghum bicolor
Sobic.007G168300 2.0kb upstream 2.0kb upstream 8286 true Chr07: 60318410-60326695 Sorghum bicolor
Sobic.007G168300 2.0kb upstream 2.0kb upstream 2000 false Chr07: 60324696-60326695 Sorghum bicolor
Sobic.007G168300 2.0kb downstream 2.0kb downstream 8286 true Chr07: 60316410-60324695 Sorghum bicolor
Sobic.007G168300 2.0kb downstream 2.0kb downstream 2000 false Chr07: 60316410-60318409 Sorghum bicolor
Sobic.007G168300 5.0kb upstream 5.0kb upstream 11286 true Chr07: 60318410-60329695 Sorghum bicolor
Sobic.007G168300 5.0kb upstream 5.0kb upstream 5000 false Chr07: 60324696-60329695 Sorghum bicolor
Sobic.007G168300 5.0kb downstream 5.0kb downstream 11286 true Chr07: 60313410-60324695 Sorghum bicolor
Sobic.007G168300 5.0kb downstream 5.0kb downstream 5000 false Chr07: 60313410-60318409 Sorghum bicolor
Sobic.007G168300 10.0kb upstream 10.0kb upstream 16286 true Chr07: 60318410-60334695 Sorghum bicolor
Sobic.007G168300 10.0kb upstream 10.0kb upstream 10000 false Chr07: 60324696-60334695 Sorghum bicolor
Sobic.007G168300 10.0kb downstream 10.0kb downstream 16286 true Chr07: 60308410-60324695 Sorghum bicolor
Sobic.007G168300 10.0kb downstream 10.0kb downstream 10000 false Chr07: 60308410-60318409 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181207 5267 Panicoideae View MSA
124578816 5269 Grass View MSA
122044417 5273 Angiosperm View MSA
121347707 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.407        
cufflinks 2.685       Low
cufflinks 6.203        
cufflinks 7.34        
cufflinks 11.821        
cufflinks 7.642        
cufflinks 7.757        
cufflinks 4.242       Low
cufflinks 10.87        
cufflinks 11.94     High  
cufflinks 9.19        
cufflinks 10.95        
cufflinks 10.744        
cufflinks 8.55        
cufflinks 12.103     High High
cufflinks 4.415       Low
cufflinks 7.772        
cufflinks 7.814        
cufflinks 5.91        
cufflinks 8.009        
cufflinks 20.808     High High
cufflinks 8.667        
cufflinks 10.164        
cufflinks 10.279        
cufflinks 4.435       Low
cufflinks 3.029       Low
cufflinks 7.959        
cufflinks 2.575       Low
cufflinks 6.356        
cufflinks 15.829     High High

0 Strain