Gene : Sobic.007G167800 S. bicolor v3.1.1
Defline:  (1 of 1) 4.2.1.9 - Dihydroxy-acid dehydratase Genomic Order:  1764
Name:  ? Sobic.007G167800 Secondary Identifier:  ? PAC:37936013
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor BRANCHED-CHAIN-AA-SYN-PWY Sorghum bicolor pathologic  
Sbicolor ILEUSYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-3001 Sorghum bicolor pathologic  
Sbicolor VALSYN-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G167800 0.5kb upstream 0.5kb upstream 5750 true Chr07: 60290952-60296701 Sorghum bicolor
Sobic.007G167800 0.5kb upstream 0.5kb upstream 500 false Chr07: 60296202-60296701 Sorghum bicolor
Sobic.007G167800 0.5kb downstream 0.5kb downstream 5750 true Chr07: 60290452-60296201 Sorghum bicolor
Sobic.007G167800 0.5kb downstream 0.5kb downstream 500 false Chr07: 60290452-60290951 Sorghum bicolor
Sobic.007G167800 1.0kb upstream 1.0kb upstream 6250 true Chr07: 60290952-60297201 Sorghum bicolor
Sobic.007G167800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 60296202-60297201 Sorghum bicolor
Sobic.007G167800 1.0kb downstream 1.0kb downstream 6250 true Chr07: 60289952-60296201 Sorghum bicolor
Sobic.007G167800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 60289952-60290951 Sorghum bicolor
Sobic.007G167800 2.0kb upstream 2.0kb upstream 7250 true Chr07: 60290952-60298201 Sorghum bicolor
Sobic.007G167800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 60296202-60298201 Sorghum bicolor
Sobic.007G167800 2.0kb downstream 2.0kb downstream 7250 true Chr07: 60288952-60296201 Sorghum bicolor
Sobic.007G167800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 60288952-60290951 Sorghum bicolor
Sobic.007G167800 5.0kb upstream 5.0kb upstream 10250 true Chr07: 60290952-60301201 Sorghum bicolor
Sobic.007G167800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 60296202-60301201 Sorghum bicolor
Sobic.007G167800 5.0kb downstream 5.0kb downstream 10250 true Chr07: 60285952-60296201 Sorghum bicolor
Sobic.007G167800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 60285952-60290951 Sorghum bicolor
Sobic.007G167800 10.0kb upstream 10.0kb upstream 15250 true Chr07: 60290952-60306201 Sorghum bicolor
Sobic.007G167800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 60296202-60306201 Sorghum bicolor
Sobic.007G167800 10.0kb downstream 10.0kb downstream 15250 true Chr07: 60280952-60296201 Sorghum bicolor
Sobic.007G167800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 60280952-60290951 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181183 5267 Panicoideae View MSA
124569802 5269 Grass View MSA
122041651 5273 Angiosperm View MSA
121345047 5274 Embryophyte View MSA
123424997 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.653        
cufflinks 0.417       Low
cufflinks 0.864       Low
cufflinks 1.706        
cufflinks 13.493     High  
cufflinks 2.462        
cufflinks 7.94        
cufflinks 1.137       Low
cufflinks 7.274        
cufflinks 9.162        
cufflinks 18.867     High  
cufflinks 11.485        
cufflinks 4.906        
cufflinks 12.999     High  
cufflinks 5.615        
cufflinks 0.791       Low
cufflinks 8.325        
cufflinks 9.361        
cufflinks 0.776       Low
cufflinks 4.975        
cufflinks 17.074     High  
cufflinks 21.154     High High
cufflinks 18.903     High  
cufflinks 20.318     High High
cufflinks 0.5       Low
cufflinks 0.487       Low
cufflinks 6.757        
cufflinks 0.982       Low
cufflinks 7.998        
cufflinks 13.441     High  

0 Strain