Gene : Sobic.007G203500 S. bicolor v3.1.1
Defline:  (1 of 14) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  2121
Name:  ? Sobic.007G203500 Secondary Identifier:  ? PAC:37934276
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G203500 0.5kb upstream 0.5kb upstream 7151 true Chr07: 63408040-63415190 Sorghum bicolor
Sobic.007G203500 0.5kb upstream 0.5kb upstream 500 false Chr07: 63414691-63415190 Sorghum bicolor
Sobic.007G203500 0.5kb downstream 0.5kb downstream 7151 true Chr07: 63407540-63414690 Sorghum bicolor
Sobic.007G203500 0.5kb downstream 0.5kb downstream 500 false Chr07: 63407540-63408039 Sorghum bicolor
Sobic.007G203500 1.0kb upstream 1.0kb upstream 7651 true Chr07: 63408040-63415690 Sorghum bicolor
Sobic.007G203500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 63414691-63415690 Sorghum bicolor
Sobic.007G203500 1.0kb downstream 1.0kb downstream 7651 true Chr07: 63407040-63414690 Sorghum bicolor
Sobic.007G203500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 63407040-63408039 Sorghum bicolor
Sobic.007G203500 2.0kb upstream 2.0kb upstream 8651 true Chr07: 63408040-63416690 Sorghum bicolor
Sobic.007G203500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 63414691-63416690 Sorghum bicolor
Sobic.007G203500 2.0kb downstream 2.0kb downstream 8651 true Chr07: 63406040-63414690 Sorghum bicolor
Sobic.007G203500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 63406040-63408039 Sorghum bicolor
Sobic.007G203500 5.0kb upstream 5.0kb upstream 11651 true Chr07: 63408040-63419690 Sorghum bicolor
Sobic.007G203500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 63414691-63419690 Sorghum bicolor
Sobic.007G203500 5.0kb downstream 5.0kb downstream 11651 true Chr07: 63403040-63414690 Sorghum bicolor
Sobic.007G203500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 63403040-63408039 Sorghum bicolor
Sobic.007G203500 10.0kb upstream 10.0kb upstream 16651 true Chr07: 63408040-63424690 Sorghum bicolor
Sobic.007G203500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 63414691-63424690 Sorghum bicolor
Sobic.007G203500 10.0kb downstream 10.0kb downstream 16651 true Chr07: 63398040-63414690 Sorghum bicolor
Sobic.007G203500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 63398040-63408039 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187321 5267 Panicoideae View MSA
124574948 5269 Grass View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.385       Low
cufflinks 12.808     High Low
cufflinks 21.751     High  
cufflinks 21.058     High  
cufflinks 14.631     High Low
cufflinks 33.63     High  
cufflinks 48.361     High  
cufflinks 46.663     High  
cufflinks 51.6     High  
cufflinks 46.819     High  
cufflinks 55.919     High  
cufflinks 83.647     High High
cufflinks 59.801     High  
cufflinks 61.065     High  
cufflinks 33.804     High  
cufflinks 16.654     High  
cufflinks 46.035     High  
cufflinks 45.384     High  
cufflinks 41.713     High  
cufflinks 48.049     High  
cufflinks 15.612     High Low
cufflinks 47.321     High  
cufflinks 69.438     High  
cufflinks 64.602     High  
cufflinks 23.743     High  
cufflinks 15.597     High Low
cufflinks 61.184     High  
cufflinks 2.622       Low
cufflinks 73.922     High High
cufflinks 27.3     High  

0 Strain