Gene : Sobic.007G225800 S. bicolor v3.1.1
Defline:  (1 of 1) K15335 - tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.203] (NSUN2) Genomic Order:  2355
Name:  ? Sobic.007G225800 Secondary Identifier:  ? PAC:37935816
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6829 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G225800 0.5kb upstream 0.5kb upstream 7596 true Chr07: 65311344-65318939 Sorghum bicolor
Sobic.007G225800 0.5kb upstream 0.5kb upstream 500 false Chr07: 65311344-65311843 Sorghum bicolor
Sobic.007G225800 0.5kb downstream 0.5kb downstream 7596 true Chr07: 65311844-65319439 Sorghum bicolor
Sobic.007G225800 0.5kb downstream 0.5kb downstream 500 false Chr07: 65318940-65319439 Sorghum bicolor
Sobic.007G225800 1.0kb upstream 1.0kb upstream 8096 true Chr07: 65310844-65318939 Sorghum bicolor
Sobic.007G225800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 65310844-65311843 Sorghum bicolor
Sobic.007G225800 1.0kb downstream 1.0kb downstream 8096 true Chr07: 65311844-65319939 Sorghum bicolor
Sobic.007G225800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 65318940-65319939 Sorghum bicolor
Sobic.007G225800 2.0kb upstream 2.0kb upstream 9096 true Chr07: 65309844-65318939 Sorghum bicolor
Sobic.007G225800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 65309844-65311843 Sorghum bicolor
Sobic.007G225800 2.0kb downstream 2.0kb downstream 9096 true Chr07: 65311844-65320939 Sorghum bicolor
Sobic.007G225800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 65318940-65320939 Sorghum bicolor
Sobic.007G225800 5.0kb upstream 5.0kb upstream 12096 true Chr07: 65306844-65318939 Sorghum bicolor
Sobic.007G225800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 65306844-65311843 Sorghum bicolor
Sobic.007G225800 5.0kb downstream 5.0kb downstream 12096 true Chr07: 65311844-65323939 Sorghum bicolor
Sobic.007G225800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 65318940-65323939 Sorghum bicolor
Sobic.007G225800 10.0kb upstream 10.0kb upstream 17096 true Chr07: 65301844-65318939 Sorghum bicolor
Sobic.007G225800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 65301844-65311843 Sorghum bicolor
Sobic.007G225800 10.0kb downstream 10.0kb downstream 17096 true Chr07: 65311844-65328939 Sorghum bicolor
Sobic.007G225800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 65318940-65328939 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176518 5267 Panicoideae View MSA
124584672 5269 Grass View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.866       Low
cufflinks 8.412     High  
cufflinks 7.251        
cufflinks 3.935        
cufflinks 12.904     High High
cufflinks 8.624        
cufflinks 8.245        
cufflinks 14.137     High High
cufflinks 5.129        
cufflinks 4.598        
cufflinks 8.185        
cufflinks 4.489        
cufflinks 5.767        
cufflinks 3.979        
cufflinks 8.141        
cufflinks 7.648        
cufflinks 7.057        
cufflinks 8.64        
cufflinks 9.693        
cufflinks 3.86        
cufflinks 16.648     High High
cufflinks 3.773        
cufflinks 4.791        
cufflinks 4.564        
cufflinks 10.663     High  
cufflinks 12.618     High High
cufflinks 5.869        
cufflinks 3.836        
cufflinks 12.311     High High
cufflinks 6.816        

0 Strain