Gene : Sobic.007G218600 S. bicolor v3.1.1
Defline:  (1 of 2) K00761 - uracil phosphoribosyltransferase (upp, UPRT) Genomic Order:  2279
Name:  ? Sobic.007G218600 Secondary Identifier:  ? PAC:37936115
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7183 Sorghum bicolor pathologic  
Sbicolor PWY-7196 Sorghum bicolor pathologic  
Sbicolor PWY-7208 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G218600 0.5kb upstream 0.5kb upstream 4039 true Chr07: 64682391-64686429 Sorghum bicolor
Sobic.007G218600 0.5kb upstream 0.5kb upstream 500 false Chr07: 64685930-64686429 Sorghum bicolor
Sobic.007G218600 0.5kb downstream 0.5kb downstream 4039 true Chr07: 64681891-64685929 Sorghum bicolor
Sobic.007G218600 0.5kb downstream 0.5kb downstream 500 false Chr07: 64681891-64682390 Sorghum bicolor
Sobic.007G218600 1.0kb upstream 1.0kb upstream 4539 true Chr07: 64682391-64686929 Sorghum bicolor
Sobic.007G218600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 64685930-64686929 Sorghum bicolor
Sobic.007G218600 1.0kb downstream 1.0kb downstream 4539 true Chr07: 64681391-64685929 Sorghum bicolor
Sobic.007G218600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 64681391-64682390 Sorghum bicolor
Sobic.007G218600 2.0kb upstream 2.0kb upstream 5539 true Chr07: 64682391-64687929 Sorghum bicolor
Sobic.007G218600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 64685930-64687929 Sorghum bicolor
Sobic.007G218600 2.0kb downstream 2.0kb downstream 5539 true Chr07: 64680391-64685929 Sorghum bicolor
Sobic.007G218600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 64680391-64682390 Sorghum bicolor
Sobic.007G218600 5.0kb upstream 5.0kb upstream 8539 true Chr07: 64682391-64690929 Sorghum bicolor
Sobic.007G218600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 64685930-64690929 Sorghum bicolor
Sobic.007G218600 5.0kb downstream 5.0kb downstream 8539 true Chr07: 64677391-64685929 Sorghum bicolor
Sobic.007G218600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 64677391-64682390 Sorghum bicolor
Sobic.007G218600 10.0kb upstream 10.0kb upstream 13539 true Chr07: 64682391-64695929 Sorghum bicolor
Sobic.007G218600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 64685930-64695929 Sorghum bicolor
Sobic.007G218600 10.0kb downstream 10.0kb downstream 13539 true Chr07: 64672391-64685929 Sorghum bicolor
Sobic.007G218600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 64672391-64682390 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175140 5267 Panicoideae View MSA
124585714 5269 Grass View MSA
122047935 5273 Angiosperm View MSA
121345361 5274 Embryophyte View MSA
123424478 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.193       High
cufflinks 0.519       Low
cufflinks 1.152        
cufflinks 1.932        
cufflinks 2.719        
cufflinks 2.036        
cufflinks 1.254        
cufflinks 0.713       Low
cufflinks 2.766       High
cufflinks 2.965       High
cufflinks 1.508        
cufflinks 1.453        
cufflinks 2.986       High
cufflinks 2.002        
cufflinks 2.636        
cufflinks 0.949       Low
cufflinks 1.326        
cufflinks 1.359        
cufflinks 0.793       Low
cufflinks 1.54        
cufflinks 2.265        
cufflinks 1.962        
cufflinks 1.606        
cufflinks 1.55        
cufflinks 0.983        
cufflinks 0.403       Low
cufflinks 2.344        
cufflinks 0.759       Low
cufflinks 1.262        
cufflinks 3.442       High

0 Strain