Gene : Sobic.008G042600 S. bicolor v3.1.1
Defline:  (1 of 1) 2.4.1.101 - Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase / 1,2-N-acetylglucosaminyltransferase Genomic Order:  439
Name:  ? Sobic.008G042600 Secondary Identifier:  ? PAC:37927806
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-7426 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G042600 0.5kb upstream 0.5kb upstream 5890   true Chr08: 4171938-4177827 Sorghum bicolor
Sobic.008G042600 0.5kb upstream 0.5kb upstream 500   false Chr08: 4171938-4172437 Sorghum bicolor
Sobic.008G042600 0.5kb downstream 0.5kb downstream 5890   true Chr08: 4172438-4178327 Sorghum bicolor
Sobic.008G042600 0.5kb downstream 0.5kb downstream 500   false Chr08: 4177828-4178327 Sorghum bicolor
Sobic.008G042600 1.0kb upstream 1.0kb upstream 6390   true Chr08: 4171438-4177827 Sorghum bicolor
Sobic.008G042600 1.0kb upstream 1.0kb upstream 1000   false Chr08: 4171438-4172437 Sorghum bicolor
Sobic.008G042600 1.0kb downstream 1.0kb downstream 6390   true Chr08: 4172438-4178827 Sorghum bicolor
Sobic.008G042600 1.0kb downstream 1.0kb downstream 1000   false Chr08: 4177828-4178827 Sorghum bicolor
Sobic.008G042600 2.0kb upstream 2.0kb upstream 7390   true Chr08: 4170438-4177827 Sorghum bicolor
Sobic.008G042600 2.0kb upstream 2.0kb upstream 2000   false Chr08: 4170438-4172437 Sorghum bicolor
Sobic.008G042600 2.0kb downstream 2.0kb downstream 7390   true Chr08: 4172438-4179827 Sorghum bicolor
Sobic.008G042600 2.0kb downstream 2.0kb downstream 2000   false Chr08: 4177828-4179827 Sorghum bicolor
Sobic.008G042600 5.0kb upstream 5.0kb upstream 10390   true Chr08: 4167438-4177827 Sorghum bicolor
Sobic.008G042600 5.0kb upstream 5.0kb upstream 5000   false Chr08: 4167438-4172437 Sorghum bicolor
Sobic.008G042600 5.0kb downstream 5.0kb downstream 10390   true Chr08: 4172438-4182827 Sorghum bicolor
Sobic.008G042600 5.0kb downstream 5.0kb downstream 5000   false Chr08: 4177828-4182827 Sorghum bicolor
Sobic.008G042600 10.0kb upstream 10.0kb upstream 15390   true Chr08: 4162438-4177827 Sorghum bicolor
Sobic.008G042600 10.0kb upstream 10.0kb upstream 10000   false Chr08: 4162438-4172437 Sorghum bicolor
Sobic.008G042600 10.0kb downstream 10.0kb downstream 15390   true Chr08: 4172438-4187827 Sorghum bicolor
Sobic.008G042600 10.0kb downstream 10.0kb downstream 10000   false Chr08: 4177828-4187827 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193900 5267 Panicoideae View MSA
124574164 5269 Grass View MSA
122050416 5273 Angiosperm View MSA
121350019 5274 Embryophyte View MSA
123426685 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.986       Low
cufflinks 4.241       Low
cufflinks 12.745     High  
cufflinks 15.76     High  
cufflinks 12.704     High  
cufflinks 28.096     High High
cufflinks 8.333        
cufflinks 5.986       Low
cufflinks 15.765     High  
cufflinks 15.706     High  
cufflinks 11.492        
cufflinks 11.916     High  
cufflinks 15.459     High  
cufflinks 10.942        
cufflinks 16.479     High  
cufflinks 12.863     High  
cufflinks 8.342        
cufflinks 9.134        
cufflinks 14.018     High  
cufflinks 10.354        
cufflinks 10.418        
cufflinks 15.765     High  
cufflinks 12.126     High  
cufflinks 11.537     High  
cufflinks 8.556     High  
cufflinks 3.727       Low
cufflinks 12.934     High  
cufflinks 6.232       Low
cufflinks 12.349     High  
cufflinks 15.889     High  

0 Strain