Gene : Sobic.008G019532 S. bicolor v3.1.1
Defline:  (1 of 2) 1.1.1.3 - Homoserine dehydrogenase Genomic Order:  202
Name:  ? Sobic.008G019532 Secondary Identifier:  ? PAC:37928274
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor HOMOSERSYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-3001 Sorghum bicolor pathologic  
Sbicolor PWY-724 Sorghum bicolor pathologic  
Sbicolor THRESYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G019532 0.5kb upstream 0.5kb upstream 4019   true Chr08: 1669566-1673584 Sorghum bicolor
Sobic.008G019532 0.5kb upstream 0.5kb upstream 500   false Chr08: 1669566-1670065 Sorghum bicolor
Sobic.008G019532 0.5kb downstream 0.5kb downstream 4019   true Chr08: 1670066-1674084 Sorghum bicolor
Sobic.008G019532 0.5kb downstream 0.5kb downstream 500   false Chr08: 1673585-1674084 Sorghum bicolor
Sobic.008G019532 1.0kb upstream 1.0kb upstream 4519   true Chr08: 1669066-1673584 Sorghum bicolor
Sobic.008G019532 1.0kb upstream 1.0kb upstream 1000   false Chr08: 1669066-1670065 Sorghum bicolor
Sobic.008G019532 1.0kb downstream 1.0kb downstream 4519   true Chr08: 1670066-1674584 Sorghum bicolor
Sobic.008G019532 1.0kb downstream 1.0kb downstream 1000   false Chr08: 1673585-1674584 Sorghum bicolor
Sobic.008G019532 2.0kb upstream 2.0kb upstream 5519   true Chr08: 1668066-1673584 Sorghum bicolor
Sobic.008G019532 2.0kb upstream 2.0kb upstream 2000   false Chr08: 1668066-1670065 Sorghum bicolor
Sobic.008G019532 2.0kb downstream 2.0kb downstream 5519   true Chr08: 1670066-1675584 Sorghum bicolor
Sobic.008G019532 2.0kb downstream 2.0kb downstream 2000   false Chr08: 1673585-1675584 Sorghum bicolor
Sobic.008G019532 5.0kb upstream 5.0kb upstream 8519   true Chr08: 1665066-1673584 Sorghum bicolor
Sobic.008G019532 5.0kb upstream 5.0kb upstream 5000   false Chr08: 1665066-1670065 Sorghum bicolor
Sobic.008G019532 5.0kb downstream 5.0kb downstream 8519   true Chr08: 1670066-1678584 Sorghum bicolor
Sobic.008G019532 5.0kb downstream 5.0kb downstream 5000   false Chr08: 1673585-1678584 Sorghum bicolor
Sobic.008G019532 10.0kb upstream 10.0kb upstream 13519   true Chr08: 1660066-1673584 Sorghum bicolor
Sobic.008G019532 10.0kb upstream 10.0kb upstream 10000   false Chr08: 1660066-1670065 Sorghum bicolor
Sobic.008G019532 10.0kb downstream 10.0kb downstream 13519   true Chr08: 1670066-1683584 Sorghum bicolor
Sobic.008G019532 10.0kb downstream 10.0kb downstream 10000   false Chr08: 1673585-1683584 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188388 5267 Panicoideae View MSA
124571730 5269 Grass View MSA
122043747 5273 Angiosperm View MSA
121349256 5274 Embryophyte View MSA
123424216 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.503       Low
cufflinks 2.443        
cufflinks 2.055        
cufflinks 2.032        
cufflinks 4.526        
cufflinks 1.422       Low
cufflinks 2.52        
cufflinks 4.451        
cufflinks 5.389       High
cufflinks 7.443       High
cufflinks 2.887        
cufflinks 2.95        
cufflinks 4.28        
cufflinks 3.177        
cufflinks 3.488        
cufflinks 1.488        
cufflinks 2.312        
cufflinks 2.616        
cufflinks 2.172        
cufflinks 2.229        
cufflinks 4.371        
cufflinks 3.488        
cufflinks 3.027        
cufflinks 2.992        
cufflinks 1.905        
cufflinks 3.676        
cufflinks 2.589        
cufflinks 0.154       Low
cufflinks 3.832        
cufflinks 4.948        

0 Strain