Gene : Sobic.008G085300 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED Genomic Order:  880
Name:  ? Sobic.008G085300 Secondary Identifier:  ? PAC:37927581
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G085300 0.5kb upstream 0.5kb upstream 13325   true Chr08: 16682997-16696321 Sorghum bicolor
Sobic.008G085300 0.5kb upstream 0.5kb upstream 500   false Chr08: 16695822-16696321 Sorghum bicolor
Sobic.008G085300 0.5kb downstream 0.5kb downstream 13325   true Chr08: 16682497-16695821 Sorghum bicolor
Sobic.008G085300 0.5kb downstream 0.5kb downstream 500   false Chr08: 16682497-16682996 Sorghum bicolor
Sobic.008G085300 1.0kb upstream 1.0kb upstream 13825   true Chr08: 16682997-16696821 Sorghum bicolor
Sobic.008G085300 1.0kb upstream 1.0kb upstream 1000   false Chr08: 16695822-16696821 Sorghum bicolor
Sobic.008G085300 1.0kb downstream 1.0kb downstream 13825   true Chr08: 16681997-16695821 Sorghum bicolor
Sobic.008G085300 1.0kb downstream 1.0kb downstream 1000   false Chr08: 16681997-16682996 Sorghum bicolor
Sobic.008G085300 2.0kb upstream 2.0kb upstream 14825   true Chr08: 16682997-16697821 Sorghum bicolor
Sobic.008G085300 2.0kb upstream 2.0kb upstream 2000   false Chr08: 16695822-16697821 Sorghum bicolor
Sobic.008G085300 2.0kb downstream 2.0kb downstream 14825   true Chr08: 16680997-16695821 Sorghum bicolor
Sobic.008G085300 2.0kb downstream 2.0kb downstream 2000   false Chr08: 16680997-16682996 Sorghum bicolor
Sobic.008G085300 5.0kb upstream 5.0kb upstream 17825   true Chr08: 16682997-16700821 Sorghum bicolor
Sobic.008G085300 5.0kb upstream 5.0kb upstream 5000   false Chr08: 16695822-16700821 Sorghum bicolor
Sobic.008G085300 5.0kb downstream 5.0kb downstream 17825   true Chr08: 16677997-16695821 Sorghum bicolor
Sobic.008G085300 5.0kb downstream 5.0kb downstream 5000   false Chr08: 16677997-16682996 Sorghum bicolor
Sobic.008G085300 10.0kb upstream 10.0kb upstream 22825   true Chr08: 16682997-16705821 Sorghum bicolor
Sobic.008G085300 10.0kb upstream 10.0kb upstream 10000   false Chr08: 16695822-16705821 Sorghum bicolor
Sobic.008G085300 10.0kb downstream 10.0kb downstream 22825   true Chr08: 16672997-16695821 Sorghum bicolor
Sobic.008G085300 10.0kb downstream 10.0kb downstream 10000   false Chr08: 16672997-16682996 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192203 5267 Panicoideae View MSA
124590070 5269 Grass View MSA
122044419 5273 Angiosperm View MSA
121348532 5274 Embryophyte View MSA
123428690 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.529       Low
cufflinks 3.548       Low
cufflinks 6.697        
cufflinks 5.697        
cufflinks 13.838     High  
cufflinks 5.956        
cufflinks 8.286        
cufflinks 7.057        
cufflinks 7.997        
cufflinks 7.051        
cufflinks 14.424     High  
cufflinks 16.231     High High
cufflinks 8.109        
cufflinks 13.088     High  
cufflinks 10.487        
cufflinks 4.539        
cufflinks 7.845        
cufflinks 7.7        
cufflinks 8.077        
cufflinks 8.352        
cufflinks 13.172        
cufflinks 11.792     High  
cufflinks 12.934     High  
cufflinks 12.876     High  
cufflinks 6.643        
cufflinks 4.774        
cufflinks 11.823     High  
cufflinks 0.455       Low
cufflinks 8.673        
cufflinks 12.474     High  

0 Strain