Gene : Sobic.008G082500 S. bicolor v3.1.1
Defline:  (1 of 3) K01872 - alanyl-tRNA synthetase (AARS, alaS) Genomic Order:  853
Name:  ? Sobic.008G082500 Secondary Identifier:  ? PAC:37926460
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G082500 0.5kb upstream 0.5kb upstream 20331   true Chr08: 15433543-15453873 Sorghum bicolor
Sobic.008G082500 0.5kb upstream 0.5kb upstream 500   false Chr08: 15453374-15453873 Sorghum bicolor
Sobic.008G082500 0.5kb downstream 0.5kb downstream 20331   true Chr08: 15433043-15453373 Sorghum bicolor
Sobic.008G082500 0.5kb downstream 0.5kb downstream 500   false Chr08: 15433043-15433542 Sorghum bicolor
Sobic.008G082500 1.0kb upstream 1.0kb upstream 20831   true Chr08: 15433543-15454373 Sorghum bicolor
Sobic.008G082500 1.0kb upstream 1.0kb upstream 1000   false Chr08: 15453374-15454373 Sorghum bicolor
Sobic.008G082500 1.0kb downstream 1.0kb downstream 20831   true Chr08: 15432543-15453373 Sorghum bicolor
Sobic.008G082500 1.0kb downstream 1.0kb downstream 1000   false Chr08: 15432543-15433542 Sorghum bicolor
Sobic.008G082500 2.0kb upstream 2.0kb upstream 21831   true Chr08: 15433543-15455373 Sorghum bicolor
Sobic.008G082500 2.0kb upstream 2.0kb upstream 2000   false Chr08: 15453374-15455373 Sorghum bicolor
Sobic.008G082500 2.0kb downstream 2.0kb downstream 21831   true Chr08: 15431543-15453373 Sorghum bicolor
Sobic.008G082500 2.0kb downstream 2.0kb downstream 2000   false Chr08: 15431543-15433542 Sorghum bicolor
Sobic.008G082500 5.0kb upstream 5.0kb upstream 24831   true Chr08: 15433543-15458373 Sorghum bicolor
Sobic.008G082500 5.0kb upstream 5.0kb upstream 5000   false Chr08: 15453374-15458373 Sorghum bicolor
Sobic.008G082500 5.0kb downstream 5.0kb downstream 24831   true Chr08: 15428543-15453373 Sorghum bicolor
Sobic.008G082500 5.0kb downstream 5.0kb downstream 5000   false Chr08: 15428543-15433542 Sorghum bicolor
Sobic.008G082500 10.0kb upstream 10.0kb upstream 29831   true Chr08: 15433543-15463373 Sorghum bicolor
Sobic.008G082500 10.0kb upstream 10.0kb upstream 10000   false Chr08: 15453374-15463373 Sorghum bicolor
Sobic.008G082500 10.0kb downstream 10.0kb downstream 29831   true Chr08: 15423543-15453373 Sorghum bicolor
Sobic.008G082500 10.0kb downstream 10.0kb downstream 10000   false Chr08: 15423543-15433542 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184720 5267 Panicoideae View MSA
124569806 5269 Grass View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.822     High  
cufflinks 3.762       Low
cufflinks 7.304        
cufflinks 8.36        
cufflinks 11.0        
cufflinks 6.53        
cufflinks 8.81        
cufflinks 4.488       Low
cufflinks 12.846     High  
cufflinks 14.668     High  
cufflinks 16.075     High High
cufflinks 16.444     High High
cufflinks 10.908        
cufflinks 16.185     High High
cufflinks 9.695        
cufflinks 5.755       Low
cufflinks 8.385        
cufflinks 9.39        
cufflinks 6.701        
cufflinks 7.654        
cufflinks 10.703        
cufflinks 17.434     High High
cufflinks 17.649     High High
cufflinks 17.731     High High
cufflinks 7.064        
cufflinks 3.821       Low
cufflinks 15.253     High  
cufflinks 6.053       Low
cufflinks 8.051        
cufflinks 13.65     High  

0 Strain