Gene : Sobic.008G083400 S. bicolor v3.1.1
Defline:  (1 of 1) K01940 - argininosuccinate synthase (argG, ASS1) Genomic Order:  863
Name:  ? Sobic.008G083400 Secondary Identifier:  ? PAC:37928029
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ARGSYNBSUB-PWY Sorghum bicolor pathologic  
Sbicolor ARGSYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-4984 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G083400 0.5kb upstream 0.5kb upstream 5600   true Chr08: 15922894-15928493 Sorghum bicolor
Sobic.008G083400 0.5kb upstream 0.5kb upstream 500   false Chr08: 15922894-15923393 Sorghum bicolor
Sobic.008G083400 0.5kb downstream 0.5kb downstream 5600   true Chr08: 15923394-15928993 Sorghum bicolor
Sobic.008G083400 0.5kb downstream 0.5kb downstream 500   false Chr08: 15928494-15928993 Sorghum bicolor
Sobic.008G083400 1.0kb upstream 1.0kb upstream 6100   true Chr08: 15922394-15928493 Sorghum bicolor
Sobic.008G083400 1.0kb upstream 1.0kb upstream 1000   false Chr08: 15922394-15923393 Sorghum bicolor
Sobic.008G083400 1.0kb downstream 1.0kb downstream 6100   true Chr08: 15923394-15929493 Sorghum bicolor
Sobic.008G083400 1.0kb downstream 1.0kb downstream 1000   false Chr08: 15928494-15929493 Sorghum bicolor
Sobic.008G083400 2.0kb upstream 2.0kb upstream 7100   true Chr08: 15921394-15928493 Sorghum bicolor
Sobic.008G083400 2.0kb upstream 2.0kb upstream 2000   false Chr08: 15921394-15923393 Sorghum bicolor
Sobic.008G083400 2.0kb downstream 2.0kb downstream 7100   true Chr08: 15923394-15930493 Sorghum bicolor
Sobic.008G083400 2.0kb downstream 2.0kb downstream 2000   false Chr08: 15928494-15930493 Sorghum bicolor
Sobic.008G083400 5.0kb upstream 5.0kb upstream 10100   true Chr08: 15918394-15928493 Sorghum bicolor
Sobic.008G083400 5.0kb upstream 5.0kb upstream 5000   false Chr08: 15918394-15923393 Sorghum bicolor
Sobic.008G083400 5.0kb downstream 5.0kb downstream 10100   true Chr08: 15923394-15933493 Sorghum bicolor
Sobic.008G083400 5.0kb downstream 5.0kb downstream 5000   false Chr08: 15928494-15933493 Sorghum bicolor
Sobic.008G083400 10.0kb upstream 10.0kb upstream 15100   true Chr08: 15913394-15928493 Sorghum bicolor
Sobic.008G083400 10.0kb upstream 10.0kb upstream 10000   false Chr08: 15913394-15923393 Sorghum bicolor
Sobic.008G083400 10.0kb downstream 10.0kb downstream 15100   true Chr08: 15923394-15938493 Sorghum bicolor
Sobic.008G083400 10.0kb downstream 10.0kb downstream 10000   false Chr08: 15928494-15938493 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041429 5273 Angiosperm View MSA
122193467 5267 Panicoideae View MSA
124577009 5269 Grass View MSA
121345676 5274 Embryophyte View MSA
123423772 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.35     High High
cufflinks 1.259       Low
cufflinks 3.703       Low
cufflinks 5.576        
cufflinks 27.412     High  
cufflinks 10.809        
cufflinks 17.935     High  
cufflinks 6.362        
cufflinks 18.242     High  
cufflinks 20.616     High  
cufflinks 22.806     High  
cufflinks 18.918     High  
cufflinks 12.236     High  
cufflinks 20.557     High  
cufflinks 10.937        
cufflinks 3.274       Low
cufflinks 19.155     High  
cufflinks 21.479     High  
cufflinks 3.866       Low
cufflinks 11.593        
cufflinks 35.051     High High
cufflinks 27.609     High  
cufflinks 25.509     High  
cufflinks 27.704     High  
cufflinks 1.136       Low
cufflinks 1.238       Low
cufflinks 15.122     High  
cufflinks 8.378        
cufflinks 25.341     High  
cufflinks 20.853     High  

0 Strain