Gene : 29948.t000005 R. communis v0.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  5
Name:  ? 29948.t000005 Secondary Identifier:  ? PAC:16814356
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Rcommunis CAROTENOID-PWY Ricinus communis pathologic  
Rcommunis PWY-5943 Ricinus communis pathologic  
Rcommunis PWY-5947 Ricinus communis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
29948.t000005 0.5kb upstream 0.5kb upstream 7709 true 29948: 61655-69363 Ricinus communis
29948.t000005 0.5kb upstream 0.5kb upstream 500 false 29948: 68864-69363 Ricinus communis
29948.t000005 0.5kb downstream 0.5kb downstream 7709 true 29948: 61155-68863 Ricinus communis
29948.t000005 0.5kb downstream 0.5kb downstream 500 false 29948: 61155-61654 Ricinus communis
29948.t000005 1.0kb upstream 1.0kb upstream 8209 true 29948: 61655-69863 Ricinus communis
29948.t000005 1.0kb upstream 1.0kb upstream 1000 false 29948: 68864-69863 Ricinus communis
29948.t000005 1.0kb downstream 1.0kb downstream 8209 true 29948: 60655-68863 Ricinus communis
29948.t000005 1.0kb downstream 1.0kb downstream 1000 false 29948: 60655-61654 Ricinus communis
29948.t000005 2.0kb upstream 2.0kb upstream 9209 true 29948: 61655-70863 Ricinus communis
29948.t000005 2.0kb upstream 2.0kb upstream 2000 false 29948: 68864-70863 Ricinus communis
29948.t000005 2.0kb downstream 2.0kb downstream 9209 true 29948: 59655-68863 Ricinus communis
29948.t000005 2.0kb downstream 2.0kb downstream 2000 false 29948: 59655-61654 Ricinus communis
29948.t000005 5.0kb upstream 5.0kb upstream 12209 true 29948: 61655-73863 Ricinus communis
29948.t000005 5.0kb upstream 5.0kb upstream 5000 false 29948: 68864-73863 Ricinus communis
29948.t000005 5.0kb downstream 5.0kb downstream 12209 true 29948: 56655-68863 Ricinus communis
29948.t000005 5.0kb downstream 5.0kb downstream 5000 false 29948: 56655-61654 Ricinus communis
29948.t000005 10.0kb upstream 10.0kb upstream 17209 true 29948: 61655-78863 Ricinus communis
29948.t000005 10.0kb upstream 10.0kb upstream 10000 false 29948: 68864-78863 Ricinus communis
29948.t000005 10.0kb downstream 10.0kb downstream 17209 true 29948: 51655-68863 Ricinus communis
29948.t000005 10.0kb downstream 10.0kb downstream 10000 false 29948: 51655-61654 Ricinus communis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122457322 5262 Malpighiales View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain