Gene : VIT_203s0038g01140 V. vinifera v2.1
Defline:  (1 of 1) K01388 - matrix metalloproteinase-1 (interstitial collagenase) (MMP1) Genomic Order:  85
Name:  ? VIT_203s0038g01140 Secondary Identifier:  ? PAC:38035062
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
VIT_203s0038g01140 0.5kb upstream 0.5kb upstream 1388 true chr3: 876308-877695 Vitis vinifera
VIT_203s0038g01140 0.5kb upstream 0.5kb upstream 500 false chr3: 876308-876807 Vitis vinifera
VIT_203s0038g01140 0.5kb downstream 0.5kb downstream 1388 true chr3: 876808-878195 Vitis vinifera
VIT_203s0038g01140 0.5kb downstream 0.5kb downstream 500 false chr3: 877696-878195 Vitis vinifera
VIT_203s0038g01140 1.0kb upstream 1.0kb upstream 1888 true chr3: 875808-877695 Vitis vinifera
VIT_203s0038g01140 1.0kb upstream 1.0kb upstream 1000 false chr3: 875808-876807 Vitis vinifera
VIT_203s0038g01140 1.0kb downstream 1.0kb downstream 1888 true chr3: 876808-878695 Vitis vinifera
VIT_203s0038g01140 1.0kb downstream 1.0kb downstream 1000 false chr3: 877696-878695 Vitis vinifera
VIT_203s0038g01140 2.0kb upstream 2.0kb upstream 2888 true chr3: 874808-877695 Vitis vinifera
VIT_203s0038g01140 2.0kb upstream 2.0kb upstream 2000 false chr3: 874808-876807 Vitis vinifera
VIT_203s0038g01140 2.0kb downstream 2.0kb downstream 2888 true chr3: 876808-879695 Vitis vinifera
VIT_203s0038g01140 2.0kb downstream 2.0kb downstream 2000 false chr3: 877696-879695 Vitis vinifera
VIT_203s0038g01140 5.0kb upstream 5.0kb upstream 5888 true chr3: 871808-877695 Vitis vinifera
VIT_203s0038g01140 5.0kb upstream 5.0kb upstream 5000 false chr3: 871808-876807 Vitis vinifera
VIT_203s0038g01140 5.0kb downstream 5.0kb downstream 5888 true chr3: 876808-882695 Vitis vinifera
VIT_203s0038g01140 5.0kb downstream 5.0kb downstream 5000 false chr3: 877696-882695 Vitis vinifera
VIT_203s0038g01140 10.0kb upstream 10.0kb upstream 10888 true chr3: 866808-877695 Vitis vinifera
VIT_203s0038g01140 10.0kb upstream 10.0kb upstream 10000 false chr3: 866808-876807 Vitis vinifera
VIT_203s0038g01140 10.0kb downstream 10.0kb downstream 10888 true chr3: 876808-887695 Vitis vinifera
VIT_203s0038g01140 10.0kb downstream 10.0kb downstream 10000 false chr3: 877696-887695 Vitis vinifera

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026255 5273 Angiosperm View MSA
124075488 5270 Rosid View MSA
123750653 5271 Pentapetalae View MSA
122795756 5272 Eudicot View MSA
121350353 5274 Embryophyte View MSA
123381692 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain