Gene : VIT_205s0020g00420 V. vinifera v2.1
Defline:  (1 of 1) PF00295//PF12708//PF13229 - Glycosyl hydrolases family 28 (Glyco_hydro_28) // Pectate lyase superfamily protein (Pectate_lyase_3) // Right handed beta helix region (Beta_helix) Genomic Order:  262
Name:  ? VIT_205s0020g00420 Secondary Identifier:  ? PAC:38073478
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Vvinifera PWY-1081 Vitis vinifera pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
VIT_205s0020g00420 0.5kb upstream 0.5kb upstream 2625 true chr5: 2340284-2342908 Vitis vinifera
VIT_205s0020g00420 0.5kb upstream 0.5kb upstream 500 false chr5: 2340284-2340783 Vitis vinifera
VIT_205s0020g00420 0.5kb downstream 0.5kb downstream 2625 true chr5: 2340784-2343408 Vitis vinifera
VIT_205s0020g00420 0.5kb downstream 0.5kb downstream 500 false chr5: 2342909-2343408 Vitis vinifera
VIT_205s0020g00420 1.0kb upstream 1.0kb upstream 3125 true chr5: 2339784-2342908 Vitis vinifera
VIT_205s0020g00420 1.0kb upstream 1.0kb upstream 1000 false chr5: 2339784-2340783 Vitis vinifera
VIT_205s0020g00420 1.0kb downstream 1.0kb downstream 3125 true chr5: 2340784-2343908 Vitis vinifera
VIT_205s0020g00420 1.0kb downstream 1.0kb downstream 1000 false chr5: 2342909-2343908 Vitis vinifera
VIT_205s0020g00420 2.0kb upstream 2.0kb upstream 4125 true chr5: 2338784-2342908 Vitis vinifera
VIT_205s0020g00420 2.0kb upstream 2.0kb upstream 2000 false chr5: 2338784-2340783 Vitis vinifera
VIT_205s0020g00420 2.0kb downstream 2.0kb downstream 4125 true chr5: 2340784-2344908 Vitis vinifera
VIT_205s0020g00420 2.0kb downstream 2.0kb downstream 2000 false chr5: 2342909-2344908 Vitis vinifera
VIT_205s0020g00420 5.0kb upstream 5.0kb upstream 7125 true chr5: 2335784-2342908 Vitis vinifera
VIT_205s0020g00420 5.0kb upstream 5.0kb upstream 5000 false chr5: 2335784-2340783 Vitis vinifera
VIT_205s0020g00420 5.0kb downstream 5.0kb downstream 7125 true chr5: 2340784-2347908 Vitis vinifera
VIT_205s0020g00420 5.0kb downstream 5.0kb downstream 5000 false chr5: 2342909-2347908 Vitis vinifera
VIT_205s0020g00420 10.0kb upstream 10.0kb upstream 12125 true chr5: 2330784-2342908 Vitis vinifera
VIT_205s0020g00420 10.0kb upstream 10.0kb upstream 10000 false chr5: 2330784-2340783 Vitis vinifera
VIT_205s0020g00420 10.0kb downstream 10.0kb downstream 12125 true chr5: 2340784-2352908 Vitis vinifera
VIT_205s0020g00420 10.0kb downstream 10.0kb downstream 10000 false chr5: 2342909-2352908 Vitis vinifera

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain