Gene : 30180.t000033 R. communis v0.1
Defline:  (1 of 6) K02706 - photosystem II P680 reaction center D2 protein (psbD) Genomic Order:  31
Name:  ? 30180.t000033 Secondary Identifier:  ? PAC:16822920
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Rcommunis PHOTOALL-PWY Ricinus communis pathologic  
Rcommunis PWY-101 Ricinus communis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
30180.t000033 0.5kb upstream 0.5kb upstream 939 true 30180: 678294-679232 Ricinus communis
30180.t000033 0.5kb upstream 0.5kb upstream 500 false 30180: 678733-679232 Ricinus communis
30180.t000033 0.5kb downstream 0.5kb downstream 939 true 30180: 677794-678732 Ricinus communis
30180.t000033 0.5kb downstream 0.5kb downstream 500 false 30180: 677794-678293 Ricinus communis
30180.t000033 1.0kb upstream 1.0kb upstream 1439 true 30180: 678294-679732 Ricinus communis
30180.t000033 1.0kb upstream 1.0kb upstream 1000 false 30180: 678733-679732 Ricinus communis
30180.t000033 1.0kb downstream 1.0kb downstream 1439 true 30180: 677294-678732 Ricinus communis
30180.t000033 1.0kb downstream 1.0kb downstream 1000 false 30180: 677294-678293 Ricinus communis
30180.t000033 2.0kb upstream 2.0kb upstream 2439 true 30180: 678294-680732 Ricinus communis
30180.t000033 2.0kb upstream 2.0kb upstream 2000 false 30180: 678733-680732 Ricinus communis
30180.t000033 2.0kb downstream 2.0kb downstream 2439 true 30180: 676294-678732 Ricinus communis
30180.t000033 2.0kb downstream 2.0kb downstream 2000 false 30180: 676294-678293 Ricinus communis
30180.t000033 5.0kb upstream 5.0kb upstream 5439 true 30180: 678294-683732 Ricinus communis
30180.t000033 5.0kb upstream 5.0kb upstream 5000 false 30180: 678733-683732 Ricinus communis
30180.t000033 5.0kb downstream 5.0kb downstream 5439 true 30180: 673294-678732 Ricinus communis
30180.t000033 5.0kb downstream 5.0kb downstream 5000 false 30180: 673294-678293 Ricinus communis
30180.t000033 10.0kb upstream 10.0kb upstream 10439 true 30180: 678294-688732 Ricinus communis
30180.t000033 10.0kb upstream 10.0kb upstream 10000 false 30180: 678733-688732 Ricinus communis
30180.t000033 10.0kb downstream 10.0kb downstream 10439 true 30180: 668294-678732 Ricinus communis
30180.t000033 10.0kb downstream 10.0kb downstream 10000 false 30180: 668294-678293 Ricinus communis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122442692 5262 Malpighiales Singleton cluster - no MSA
124230661 5268 Malvidae Singleton cluster - no MSA
124074862 5270 Rosid View MSA
123753260 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain