Gene : Lsat_1_v5_gn_0_10560 L. sativa V8
Defline:  (1 of 4) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  131
Name:  ? Lsat_1_v5_gn_0_10560 Secondary Identifier:  ? PAC:38936072
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_0_10560 0.5kb upstream 0.5kb upstream 3769   true Lsat_1_v8_lg_0: 13322847-13326615 Lactuca sativa
Lsat_1_v5_gn_0_10560 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_0: 13326116-13326615 Lactuca sativa
Lsat_1_v5_gn_0_10560 0.5kb downstream 0.5kb downstream 3769   true Lsat_1_v8_lg_0: 13322347-13326115 Lactuca sativa
Lsat_1_v5_gn_0_10560 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_0: 13322347-13322846 Lactuca sativa
Lsat_1_v5_gn_0_10560 1.0kb upstream 1.0kb upstream 4269   true Lsat_1_v8_lg_0: 13322847-13327115 Lactuca sativa
Lsat_1_v5_gn_0_10560 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_0: 13326116-13327115 Lactuca sativa
Lsat_1_v5_gn_0_10560 1.0kb downstream 1.0kb downstream 4269   true Lsat_1_v8_lg_0: 13321847-13326115 Lactuca sativa
Lsat_1_v5_gn_0_10560 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_0: 13321847-13322846 Lactuca sativa
Lsat_1_v5_gn_0_10560 2.0kb upstream 2.0kb upstream 5269   true Lsat_1_v8_lg_0: 13322847-13328115 Lactuca sativa
Lsat_1_v5_gn_0_10560 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_0: 13326116-13328115 Lactuca sativa
Lsat_1_v5_gn_0_10560 2.0kb downstream 2.0kb downstream 5269   true Lsat_1_v8_lg_0: 13320847-13326115 Lactuca sativa
Lsat_1_v5_gn_0_10560 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_0: 13320847-13322846 Lactuca sativa
Lsat_1_v5_gn_0_10560 5.0kb upstream 5.0kb upstream 8269   true Lsat_1_v8_lg_0: 13322847-13331115 Lactuca sativa
Lsat_1_v5_gn_0_10560 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_0: 13326116-13331115 Lactuca sativa
Lsat_1_v5_gn_0_10560 5.0kb downstream 5.0kb downstream 8269   true Lsat_1_v8_lg_0: 13317847-13326115 Lactuca sativa
Lsat_1_v5_gn_0_10560 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_0: 13317847-13322846 Lactuca sativa
Lsat_1_v5_gn_0_10560 10.0kb upstream 10.0kb upstream 13269   true Lsat_1_v8_lg_0: 13322847-13336115 Lactuca sativa
Lsat_1_v5_gn_0_10560 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_0: 13326116-13336115 Lactuca sativa
Lsat_1_v5_gn_0_10560 10.0kb downstream 10.0kb downstream 13269   true Lsat_1_v8_lg_0: 13312847-13326115 Lactuca sativa
Lsat_1_v5_gn_0_10560 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_0: 13312847-13322846 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474640 5263 Asterids View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain