Gene : Lsat_1_v5_gn_0_22580 L. sativa V8
Defline:  (1 of 1) KOG2164 - Predicted E3 ubiquitin ligase Genomic Order:  31
Name:  ? Lsat_1_v5_gn_0_22580 Secondary Identifier:  ? PAC:38935514
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_0_22580 0.5kb upstream 0.5kb upstream 4966   true Lsat_1_v8_lg_0: 2234542-2239507 Lactuca sativa
Lsat_1_v5_gn_0_22580 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_0: 2239008-2239507 Lactuca sativa
Lsat_1_v5_gn_0_22580 0.5kb downstream 0.5kb downstream 4966   true Lsat_1_v8_lg_0: 2234042-2239007 Lactuca sativa
Lsat_1_v5_gn_0_22580 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_0: 2234042-2234541 Lactuca sativa
Lsat_1_v5_gn_0_22580 1.0kb upstream 1.0kb upstream 5466   true Lsat_1_v8_lg_0: 2234542-2240007 Lactuca sativa
Lsat_1_v5_gn_0_22580 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_0: 2239008-2240007 Lactuca sativa
Lsat_1_v5_gn_0_22580 1.0kb downstream 1.0kb downstream 5466   true Lsat_1_v8_lg_0: 2233542-2239007 Lactuca sativa
Lsat_1_v5_gn_0_22580 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_0: 2233542-2234541 Lactuca sativa
Lsat_1_v5_gn_0_22580 2.0kb upstream 2.0kb upstream 6466   true Lsat_1_v8_lg_0: 2234542-2241007 Lactuca sativa
Lsat_1_v5_gn_0_22580 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_0: 2239008-2241007 Lactuca sativa
Lsat_1_v5_gn_0_22580 2.0kb downstream 2.0kb downstream 6466   true Lsat_1_v8_lg_0: 2232542-2239007 Lactuca sativa
Lsat_1_v5_gn_0_22580 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_0: 2232542-2234541 Lactuca sativa
Lsat_1_v5_gn_0_22580 5.0kb upstream 5.0kb upstream 9466   true Lsat_1_v8_lg_0: 2234542-2244007 Lactuca sativa
Lsat_1_v5_gn_0_22580 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_0: 2239008-2244007 Lactuca sativa
Lsat_1_v5_gn_0_22580 5.0kb downstream 5.0kb downstream 9466   true Lsat_1_v8_lg_0: 2229542-2239007 Lactuca sativa
Lsat_1_v5_gn_0_22580 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_0: 2229542-2234541 Lactuca sativa
Lsat_1_v5_gn_0_22580 10.0kb upstream 10.0kb upstream 14466   true Lsat_1_v8_lg_0: 2234542-2249007 Lactuca sativa
Lsat_1_v5_gn_0_22580 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_0: 2239008-2249007 Lactuca sativa
Lsat_1_v5_gn_0_22580 10.0kb downstream 10.0kb downstream 14466   true Lsat_1_v8_lg_0: 2224542-2239007 Lactuca sativa
Lsat_1_v5_gn_0_22580 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_0: 2224542-2234541 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473528 5263 Asterids View MSA
123742061 5271 Pentapetalae View MSA
122793495 5272 Eudicot View MSA
122042542 5273 Angiosperm View MSA
121344560 5274 Embryophyte View MSA
123423758 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain