Gene : Lsat_1_v5_gn_0_38980 L. sativa V8
Defline:  (1 of 2) PTHR10366:SF388 - CINNAMOYL COA REDUCTASE-LIKE PROTEIN Genomic Order:  462
Name:  ? Lsat_1_v5_gn_0_38980 Secondary Identifier:  ? PAC:38936441
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-361 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_0_38980 0.5kb upstream 0.5kb upstream 3241   true Lsat_1_v8_lg_0: 52967189-52970429 Lactuca sativa
Lsat_1_v5_gn_0_38980 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_0: 52967189-52967688 Lactuca sativa
Lsat_1_v5_gn_0_38980 0.5kb downstream 0.5kb downstream 3241   true Lsat_1_v8_lg_0: 52967689-52970929 Lactuca sativa
Lsat_1_v5_gn_0_38980 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_0: 52970430-52970929 Lactuca sativa
Lsat_1_v5_gn_0_38980 1.0kb upstream 1.0kb upstream 3741   true Lsat_1_v8_lg_0: 52966689-52970429 Lactuca sativa
Lsat_1_v5_gn_0_38980 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_0: 52966689-52967688 Lactuca sativa
Lsat_1_v5_gn_0_38980 1.0kb downstream 1.0kb downstream 3741   true Lsat_1_v8_lg_0: 52967689-52971429 Lactuca sativa
Lsat_1_v5_gn_0_38980 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_0: 52970430-52971429 Lactuca sativa
Lsat_1_v5_gn_0_38980 2.0kb upstream 2.0kb upstream 4741   true Lsat_1_v8_lg_0: 52965689-52970429 Lactuca sativa
Lsat_1_v5_gn_0_38980 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_0: 52965689-52967688 Lactuca sativa
Lsat_1_v5_gn_0_38980 2.0kb downstream 2.0kb downstream 4741   true Lsat_1_v8_lg_0: 52967689-52972429 Lactuca sativa
Lsat_1_v5_gn_0_38980 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_0: 52970430-52972429 Lactuca sativa
Lsat_1_v5_gn_0_38980 5.0kb upstream 5.0kb upstream 7741   true Lsat_1_v8_lg_0: 52962689-52970429 Lactuca sativa
Lsat_1_v5_gn_0_38980 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_0: 52962689-52967688 Lactuca sativa
Lsat_1_v5_gn_0_38980 5.0kb downstream 5.0kb downstream 7741   true Lsat_1_v8_lg_0: 52967689-52975429 Lactuca sativa
Lsat_1_v5_gn_0_38980 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_0: 52970430-52975429 Lactuca sativa
Lsat_1_v5_gn_0_38980 10.0kb upstream 10.0kb upstream 12741   true Lsat_1_v8_lg_0: 52957689-52970429 Lactuca sativa
Lsat_1_v5_gn_0_38980 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_0: 52957689-52967688 Lactuca sativa
Lsat_1_v5_gn_0_38980 10.0kb downstream 10.0kb downstream 12741   true Lsat_1_v8_lg_0: 52967689-52980429 Lactuca sativa
Lsat_1_v5_gn_0_38980 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_0: 52970430-52980429 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474893 5263 Asterids View MSA
123740788 5271 Pentapetalae View MSA
122786439 5272 Eudicot View MSA
122047901 5273 Angiosperm View MSA
121310812 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain