Gene : Lsat_1_v5_gn_1_110681 L. sativa V8
Defline:  (1 of 9) PTHR30128//PTHR30128:SF8 - OUTER MEMBRANE PROTEIN, OMPA-RELATED // PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 Genomic Order:  3433
Name:  ? Lsat_1_v5_gn_1_110681 Secondary Identifier:  ? PAC:38947284
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-101 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_110681 0.5kb upstream 0.5kb upstream 1379   true Lsat_1_v8_lg_1: 162241644-162243022 Lactuca sativa
Lsat_1_v5_gn_1_110681 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 162242523-162243022 Lactuca sativa
Lsat_1_v5_gn_1_110681 0.5kb downstream 0.5kb downstream 1379   true Lsat_1_v8_lg_1: 162241144-162242522 Lactuca sativa
Lsat_1_v5_gn_1_110681 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 162241144-162241643 Lactuca sativa
Lsat_1_v5_gn_1_110681 1.0kb upstream 1.0kb upstream 1879   true Lsat_1_v8_lg_1: 162241644-162243522 Lactuca sativa
Lsat_1_v5_gn_1_110681 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 162242523-162243522 Lactuca sativa
Lsat_1_v5_gn_1_110681 1.0kb downstream 1.0kb downstream 1879   true Lsat_1_v8_lg_1: 162240644-162242522 Lactuca sativa
Lsat_1_v5_gn_1_110681 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 162240644-162241643 Lactuca sativa
Lsat_1_v5_gn_1_110681 2.0kb upstream 2.0kb upstream 2879   true Lsat_1_v8_lg_1: 162241644-162244522 Lactuca sativa
Lsat_1_v5_gn_1_110681 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 162242523-162244522 Lactuca sativa
Lsat_1_v5_gn_1_110681 2.0kb downstream 2.0kb downstream 2879   true Lsat_1_v8_lg_1: 162239644-162242522 Lactuca sativa
Lsat_1_v5_gn_1_110681 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 162239644-162241643 Lactuca sativa
Lsat_1_v5_gn_1_110681 5.0kb upstream 5.0kb upstream 5879   true Lsat_1_v8_lg_1: 162241644-162247522 Lactuca sativa
Lsat_1_v5_gn_1_110681 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 162242523-162247522 Lactuca sativa
Lsat_1_v5_gn_1_110681 5.0kb downstream 5.0kb downstream 5879   true Lsat_1_v8_lg_1: 162236644-162242522 Lactuca sativa
Lsat_1_v5_gn_1_110681 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 162236644-162241643 Lactuca sativa
Lsat_1_v5_gn_1_110681 10.0kb upstream 10.0kb upstream 10879   true Lsat_1_v8_lg_1: 162241644-162252522 Lactuca sativa
Lsat_1_v5_gn_1_110681 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 162242523-162252522 Lactuca sativa
Lsat_1_v5_gn_1_110681 10.0kb downstream 10.0kb downstream 10879   true Lsat_1_v8_lg_1: 162231644-162242522 Lactuca sativa
Lsat_1_v5_gn_1_110681 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 162231644-162241643 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
121467669 5263 Asterids View MSA
123753251 5271 Pentapetalae View MSA
122775013 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain