Gene : Lsat_1_v5_gn_1_11560 L. sativa V8
Defline:  (1 of 3) PTHR22975 - UBIQUITIN SPECIFIC PROTEINASE Genomic Order:  356
Name:  ? Lsat_1_v5_gn_1_11560 Secondary Identifier:  ? PAC:38945888
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_11560 0.5kb upstream 0.5kb upstream 7724   true Lsat_1_v8_lg_1: 13439554-13447277 Lactuca sativa
Lsat_1_v5_gn_1_11560 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 13439554-13440053 Lactuca sativa
Lsat_1_v5_gn_1_11560 0.5kb downstream 0.5kb downstream 7724   true Lsat_1_v8_lg_1: 13440054-13447777 Lactuca sativa
Lsat_1_v5_gn_1_11560 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 13447278-13447777 Lactuca sativa
Lsat_1_v5_gn_1_11560 1.0kb upstream 1.0kb upstream 8224   true Lsat_1_v8_lg_1: 13439054-13447277 Lactuca sativa
Lsat_1_v5_gn_1_11560 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 13439054-13440053 Lactuca sativa
Lsat_1_v5_gn_1_11560 1.0kb downstream 1.0kb downstream 8224   true Lsat_1_v8_lg_1: 13440054-13448277 Lactuca sativa
Lsat_1_v5_gn_1_11560 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 13447278-13448277 Lactuca sativa
Lsat_1_v5_gn_1_11560 2.0kb upstream 2.0kb upstream 9224   true Lsat_1_v8_lg_1: 13438054-13447277 Lactuca sativa
Lsat_1_v5_gn_1_11560 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 13438054-13440053 Lactuca sativa
Lsat_1_v5_gn_1_11560 2.0kb downstream 2.0kb downstream 9224   true Lsat_1_v8_lg_1: 13440054-13449277 Lactuca sativa
Lsat_1_v5_gn_1_11560 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 13447278-13449277 Lactuca sativa
Lsat_1_v5_gn_1_11560 5.0kb upstream 5.0kb upstream 12224   true Lsat_1_v8_lg_1: 13435054-13447277 Lactuca sativa
Lsat_1_v5_gn_1_11560 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 13435054-13440053 Lactuca sativa
Lsat_1_v5_gn_1_11560 5.0kb downstream 5.0kb downstream 12224   true Lsat_1_v8_lg_1: 13440054-13452277 Lactuca sativa
Lsat_1_v5_gn_1_11560 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 13447278-13452277 Lactuca sativa
Lsat_1_v5_gn_1_11560 10.0kb upstream 10.0kb upstream 17224   true Lsat_1_v8_lg_1: 13430054-13447277 Lactuca sativa
Lsat_1_v5_gn_1_11560 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 13430054-13440053 Lactuca sativa
Lsat_1_v5_gn_1_11560 10.0kb downstream 10.0kb downstream 17224   true Lsat_1_v8_lg_1: 13440054-13457277 Lactuca sativa
Lsat_1_v5_gn_1_11560 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 13447278-13457277 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477708 5263 Asterids View MSA
123749894 5271 Pentapetalae View MSA
122797305 5272 Eudicot View MSA
122047573 5273 Angiosperm View MSA
121346745 5274 Embryophyte View MSA
123380438 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain