Gene : Lsat_1_v5_gn_1_2520 L. sativa V8
Defline:  (1 of 1) 6.3.2.6 - Phosphoribosylaminoimidazolesuccinocarboxamide synthase / SAICARs Genomic Order:  72
Name:  ? Lsat_1_v5_gn_1_2520 Secondary Identifier:  ? PAC:38947728
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6124 Lactuca sativa pathologic  
Lsativa PWY-841 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_2520 0.5kb upstream 0.5kb upstream 3207   true Lsat_1_v8_lg_1: 3117729-3120935 Lactuca sativa
Lsat_1_v5_gn_1_2520 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 3117729-3118228 Lactuca sativa
Lsat_1_v5_gn_1_2520 0.5kb downstream 0.5kb downstream 3207   true Lsat_1_v8_lg_1: 3118229-3121435 Lactuca sativa
Lsat_1_v5_gn_1_2520 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 3120936-3121435 Lactuca sativa
Lsat_1_v5_gn_1_2520 1.0kb upstream 1.0kb upstream 3707   true Lsat_1_v8_lg_1: 3117229-3120935 Lactuca sativa
Lsat_1_v5_gn_1_2520 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 3117229-3118228 Lactuca sativa
Lsat_1_v5_gn_1_2520 1.0kb downstream 1.0kb downstream 3707   true Lsat_1_v8_lg_1: 3118229-3121935 Lactuca sativa
Lsat_1_v5_gn_1_2520 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 3120936-3121935 Lactuca sativa
Lsat_1_v5_gn_1_2520 2.0kb upstream 2.0kb upstream 4707   true Lsat_1_v8_lg_1: 3116229-3120935 Lactuca sativa
Lsat_1_v5_gn_1_2520 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 3116229-3118228 Lactuca sativa
Lsat_1_v5_gn_1_2520 2.0kb downstream 2.0kb downstream 4707   true Lsat_1_v8_lg_1: 3118229-3122935 Lactuca sativa
Lsat_1_v5_gn_1_2520 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 3120936-3122935 Lactuca sativa
Lsat_1_v5_gn_1_2520 5.0kb upstream 5.0kb upstream 7707   true Lsat_1_v8_lg_1: 3113229-3120935 Lactuca sativa
Lsat_1_v5_gn_1_2520 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 3113229-3118228 Lactuca sativa
Lsat_1_v5_gn_1_2520 5.0kb downstream 5.0kb downstream 7707   true Lsat_1_v8_lg_1: 3118229-3125935 Lactuca sativa
Lsat_1_v5_gn_1_2520 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 3120936-3125935 Lactuca sativa
Lsat_1_v5_gn_1_2520 10.0kb upstream 10.0kb upstream 12707   true Lsat_1_v8_lg_1: 3108229-3120935 Lactuca sativa
Lsat_1_v5_gn_1_2520 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 3108229-3118228 Lactuca sativa
Lsat_1_v5_gn_1_2520 10.0kb downstream 10.0kb downstream 12707   true Lsat_1_v8_lg_1: 3118229-3130935 Lactuca sativa
Lsat_1_v5_gn_1_2520 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 3120936-3130935 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472049 5263 Asterids View MSA
123739359 5271 Pentapetalae View MSA
122791298 5272 Eudicot View MSA
122044442 5273 Angiosperm View MSA
121346335 5274 Embryophyte View MSA
123424061 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain