Gene : Lsat_1_v5_gn_1_14381 L. sativa V8
Defline:  (1 of 2) PTHR23327//PTHR23327:SF9 - RING FINGER PROTEIN 127 // ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN Genomic Order:  452
Name:  ? Lsat_1_v5_gn_1_14381 Secondary Identifier:  ? PAC:38942921
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_14381 0.5kb upstream 0.5kb upstream 4535   true Lsat_1_v8_lg_1: 15869831-15874365 Lactuca sativa
Lsat_1_v5_gn_1_14381 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 15873866-15874365 Lactuca sativa
Lsat_1_v5_gn_1_14381 0.5kb downstream 0.5kb downstream 4535   true Lsat_1_v8_lg_1: 15869331-15873865 Lactuca sativa
Lsat_1_v5_gn_1_14381 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 15869331-15869830 Lactuca sativa
Lsat_1_v5_gn_1_14381 1.0kb upstream 1.0kb upstream 5035   true Lsat_1_v8_lg_1: 15869831-15874865 Lactuca sativa
Lsat_1_v5_gn_1_14381 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 15873866-15874865 Lactuca sativa
Lsat_1_v5_gn_1_14381 1.0kb downstream 1.0kb downstream 5035   true Lsat_1_v8_lg_1: 15868831-15873865 Lactuca sativa
Lsat_1_v5_gn_1_14381 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 15868831-15869830 Lactuca sativa
Lsat_1_v5_gn_1_14381 2.0kb upstream 2.0kb upstream 6035   true Lsat_1_v8_lg_1: 15869831-15875865 Lactuca sativa
Lsat_1_v5_gn_1_14381 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 15873866-15875865 Lactuca sativa
Lsat_1_v5_gn_1_14381 2.0kb downstream 2.0kb downstream 6035   true Lsat_1_v8_lg_1: 15867831-15873865 Lactuca sativa
Lsat_1_v5_gn_1_14381 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 15867831-15869830 Lactuca sativa
Lsat_1_v5_gn_1_14381 5.0kb upstream 5.0kb upstream 9035   true Lsat_1_v8_lg_1: 15869831-15878865 Lactuca sativa
Lsat_1_v5_gn_1_14381 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 15873866-15878865 Lactuca sativa
Lsat_1_v5_gn_1_14381 5.0kb downstream 5.0kb downstream 9035   true Lsat_1_v8_lg_1: 15864831-15873865 Lactuca sativa
Lsat_1_v5_gn_1_14381 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 15864831-15869830 Lactuca sativa
Lsat_1_v5_gn_1_14381 10.0kb upstream 10.0kb upstream 14035   true Lsat_1_v8_lg_1: 15869831-15883865 Lactuca sativa
Lsat_1_v5_gn_1_14381 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 15873866-15883865 Lactuca sativa
Lsat_1_v5_gn_1_14381 10.0kb downstream 10.0kb downstream 14035   true Lsat_1_v8_lg_1: 15859831-15873865 Lactuca sativa
Lsat_1_v5_gn_1_14381 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 15859831-15869830 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473619 5263 Asterids View MSA
123742205 5271 Pentapetalae View MSA
122791083 5272 Eudicot View MSA
122048007 5273 Angiosperm View MSA
121347127 5274 Embryophyte View MSA
123427898 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain