Gene : Lsat_1_v5_gn_1_17201 L. sativa V8
Defline:  (1 of 1) 2.1.1.198 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Genomic Order:  572
Name:  ? Lsat_1_v5_gn_1_17201 Secondary Identifier:  ? PAC:38945887
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_17201 0.5kb upstream 0.5kb upstream 3689   true Lsat_1_v8_lg_1: 19866896-19870584 Lactuca sativa
Lsat_1_v5_gn_1_17201 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 19866896-19867395 Lactuca sativa
Lsat_1_v5_gn_1_17201 0.5kb downstream 0.5kb downstream 3689   true Lsat_1_v8_lg_1: 19867396-19871084 Lactuca sativa
Lsat_1_v5_gn_1_17201 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 19870585-19871084 Lactuca sativa
Lsat_1_v5_gn_1_17201 1.0kb upstream 1.0kb upstream 4189   true Lsat_1_v8_lg_1: 19866396-19870584 Lactuca sativa
Lsat_1_v5_gn_1_17201 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 19866396-19867395 Lactuca sativa
Lsat_1_v5_gn_1_17201 1.0kb downstream 1.0kb downstream 4189   true Lsat_1_v8_lg_1: 19867396-19871584 Lactuca sativa
Lsat_1_v5_gn_1_17201 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 19870585-19871584 Lactuca sativa
Lsat_1_v5_gn_1_17201 2.0kb upstream 2.0kb upstream 5189   true Lsat_1_v8_lg_1: 19865396-19870584 Lactuca sativa
Lsat_1_v5_gn_1_17201 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 19865396-19867395 Lactuca sativa
Lsat_1_v5_gn_1_17201 2.0kb downstream 2.0kb downstream 5189   true Lsat_1_v8_lg_1: 19867396-19872584 Lactuca sativa
Lsat_1_v5_gn_1_17201 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 19870585-19872584 Lactuca sativa
Lsat_1_v5_gn_1_17201 5.0kb upstream 5.0kb upstream 8189   true Lsat_1_v8_lg_1: 19862396-19870584 Lactuca sativa
Lsat_1_v5_gn_1_17201 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 19862396-19867395 Lactuca sativa
Lsat_1_v5_gn_1_17201 5.0kb downstream 5.0kb downstream 8189   true Lsat_1_v8_lg_1: 19867396-19875584 Lactuca sativa
Lsat_1_v5_gn_1_17201 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 19870585-19875584 Lactuca sativa
Lsat_1_v5_gn_1_17201 10.0kb upstream 10.0kb upstream 13189   true Lsat_1_v8_lg_1: 19857396-19870584 Lactuca sativa
Lsat_1_v5_gn_1_17201 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 19857396-19867395 Lactuca sativa
Lsat_1_v5_gn_1_17201 10.0kb downstream 10.0kb downstream 13189   true Lsat_1_v8_lg_1: 19867396-19880584 Lactuca sativa
Lsat_1_v5_gn_1_17201 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 19870585-19880584 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475436 5263 Asterids View MSA
123741052 5271 Pentapetalae View MSA
122786797 5272 Eudicot View MSA
122043278 5273 Angiosperm View MSA
121347213 5274 Embryophyte View MSA
123424563 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain