Gene : Lsat_1_v5_gn_1_53840 L. sativa V8
Defline:  (1 of 3) K10590 - E3 ubiquitin-protein ligase TRIP12 (TRIP12) Genomic Order:  1803
Name:  ? Lsat_1_v5_gn_1_53840 Secondary Identifier:  ? PAC:38945877
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_53840 0.5kb upstream 0.5kb upstream 7148   true Lsat_1_v8_lg_1: 63424130-63431277 Lactuca sativa
Lsat_1_v5_gn_1_53840 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 63430778-63431277 Lactuca sativa
Lsat_1_v5_gn_1_53840 0.5kb downstream 0.5kb downstream 7148   true Lsat_1_v8_lg_1: 63423630-63430777 Lactuca sativa
Lsat_1_v5_gn_1_53840 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 63423630-63424129 Lactuca sativa
Lsat_1_v5_gn_1_53840 1.0kb upstream 1.0kb upstream 7648   true Lsat_1_v8_lg_1: 63424130-63431777 Lactuca sativa
Lsat_1_v5_gn_1_53840 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 63430778-63431777 Lactuca sativa
Lsat_1_v5_gn_1_53840 1.0kb downstream 1.0kb downstream 7648   true Lsat_1_v8_lg_1: 63423130-63430777 Lactuca sativa
Lsat_1_v5_gn_1_53840 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 63423130-63424129 Lactuca sativa
Lsat_1_v5_gn_1_53840 2.0kb upstream 2.0kb upstream 8648   true Lsat_1_v8_lg_1: 63424130-63432777 Lactuca sativa
Lsat_1_v5_gn_1_53840 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 63430778-63432777 Lactuca sativa
Lsat_1_v5_gn_1_53840 2.0kb downstream 2.0kb downstream 8648   true Lsat_1_v8_lg_1: 63422130-63430777 Lactuca sativa
Lsat_1_v5_gn_1_53840 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 63422130-63424129 Lactuca sativa
Lsat_1_v5_gn_1_53840 5.0kb upstream 5.0kb upstream 11648   true Lsat_1_v8_lg_1: 63424130-63435777 Lactuca sativa
Lsat_1_v5_gn_1_53840 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 63430778-63435777 Lactuca sativa
Lsat_1_v5_gn_1_53840 5.0kb downstream 5.0kb downstream 11648   true Lsat_1_v8_lg_1: 63419130-63430777 Lactuca sativa
Lsat_1_v5_gn_1_53840 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 63419130-63424129 Lactuca sativa
Lsat_1_v5_gn_1_53840 10.0kb upstream 10.0kb upstream 16648   true Lsat_1_v8_lg_1: 63424130-63440777 Lactuca sativa
Lsat_1_v5_gn_1_53840 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 63430778-63440777 Lactuca sativa
Lsat_1_v5_gn_1_53840 10.0kb downstream 10.0kb downstream 16648   true Lsat_1_v8_lg_1: 63414130-63430777 Lactuca sativa
Lsat_1_v5_gn_1_53840 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 63414130-63424129 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472496 5263 Asterids View MSA
123736938 5271 Pentapetalae View MSA
122796953 5272 Eudicot View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain