Gene : Lsat_1_v5_gn_1_55000 L. sativa V8
Defline:  (1 of 1) PTHR26312//PTHR26312:SF76 - FAMILY NOT NAMED // TETRATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN Genomic Order:  1831
Name:  ? Lsat_1_v5_gn_1_55000 Secondary Identifier:  ? PAC:38943346
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_55000 0.5kb upstream 0.5kb upstream 1944   true Lsat_1_v8_lg_1: 64564956-64566899 Lactuca sativa
Lsat_1_v5_gn_1_55000 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 64566400-64566899 Lactuca sativa
Lsat_1_v5_gn_1_55000 0.5kb downstream 0.5kb downstream 1944   true Lsat_1_v8_lg_1: 64564456-64566399 Lactuca sativa
Lsat_1_v5_gn_1_55000 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 64564456-64564955 Lactuca sativa
Lsat_1_v5_gn_1_55000 1.0kb upstream 1.0kb upstream 2444   true Lsat_1_v8_lg_1: 64564956-64567399 Lactuca sativa
Lsat_1_v5_gn_1_55000 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 64566400-64567399 Lactuca sativa
Lsat_1_v5_gn_1_55000 1.0kb downstream 1.0kb downstream 2444   true Lsat_1_v8_lg_1: 64563956-64566399 Lactuca sativa
Lsat_1_v5_gn_1_55000 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 64563956-64564955 Lactuca sativa
Lsat_1_v5_gn_1_55000 2.0kb upstream 2.0kb upstream 3444   true Lsat_1_v8_lg_1: 64564956-64568399 Lactuca sativa
Lsat_1_v5_gn_1_55000 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 64566400-64568399 Lactuca sativa
Lsat_1_v5_gn_1_55000 2.0kb downstream 2.0kb downstream 3444   true Lsat_1_v8_lg_1: 64562956-64566399 Lactuca sativa
Lsat_1_v5_gn_1_55000 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 64562956-64564955 Lactuca sativa
Lsat_1_v5_gn_1_55000 5.0kb upstream 5.0kb upstream 6444   true Lsat_1_v8_lg_1: 64564956-64571399 Lactuca sativa
Lsat_1_v5_gn_1_55000 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 64566400-64571399 Lactuca sativa
Lsat_1_v5_gn_1_55000 5.0kb downstream 5.0kb downstream 6444   true Lsat_1_v8_lg_1: 64559956-64566399 Lactuca sativa
Lsat_1_v5_gn_1_55000 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 64559956-64564955 Lactuca sativa
Lsat_1_v5_gn_1_55000 10.0kb upstream 10.0kb upstream 11444   true Lsat_1_v8_lg_1: 64564956-64576399 Lactuca sativa
Lsat_1_v5_gn_1_55000 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 64566400-64576399 Lactuca sativa
Lsat_1_v5_gn_1_55000 10.0kb downstream 10.0kb downstream 11444   true Lsat_1_v8_lg_1: 64554956-64566399 Lactuca sativa
Lsat_1_v5_gn_1_55000 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 64554956-64564955 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469026 5263 Asterids View MSA
123737830 5271 Pentapetalae View MSA
122791127 5272 Eudicot View MSA
122050724 5273 Angiosperm View MSA
121348352 5274 Embryophyte View MSA
123426406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain