Gene : Lsat_1_v5_gn_1_5820 L. sativa V8
Defline:  (1 of 1) PTHR30128//PTHR30128:SF4//PTHR30128:SF8 - OUTER MEMBRANE PROTEIN, OMPA-RELATED // PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 // PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 Genomic Order:  176
Name:  ? Lsat_1_v5_gn_1_5820 Secondary Identifier:  ? PAC:38943750
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-101 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_5820 0.5kb upstream 0.5kb upstream 4184   true Lsat_1_v8_lg_1: 6748389-6752572 Lactuca sativa
Lsat_1_v5_gn_1_5820 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 6752073-6752572 Lactuca sativa
Lsat_1_v5_gn_1_5820 0.5kb downstream 0.5kb downstream 4184   true Lsat_1_v8_lg_1: 6747889-6752072 Lactuca sativa
Lsat_1_v5_gn_1_5820 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 6747889-6748388 Lactuca sativa
Lsat_1_v5_gn_1_5820 1.0kb upstream 1.0kb upstream 4684   true Lsat_1_v8_lg_1: 6748389-6753072 Lactuca sativa
Lsat_1_v5_gn_1_5820 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 6752073-6753072 Lactuca sativa
Lsat_1_v5_gn_1_5820 1.0kb downstream 1.0kb downstream 4684   true Lsat_1_v8_lg_1: 6747389-6752072 Lactuca sativa
Lsat_1_v5_gn_1_5820 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 6747389-6748388 Lactuca sativa
Lsat_1_v5_gn_1_5820 2.0kb upstream 2.0kb upstream 5684   true Lsat_1_v8_lg_1: 6748389-6754072 Lactuca sativa
Lsat_1_v5_gn_1_5820 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 6752073-6754072 Lactuca sativa
Lsat_1_v5_gn_1_5820 2.0kb downstream 2.0kb downstream 5684   true Lsat_1_v8_lg_1: 6746389-6752072 Lactuca sativa
Lsat_1_v5_gn_1_5820 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 6746389-6748388 Lactuca sativa
Lsat_1_v5_gn_1_5820 5.0kb upstream 5.0kb upstream 8684   true Lsat_1_v8_lg_1: 6748389-6757072 Lactuca sativa
Lsat_1_v5_gn_1_5820 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 6752073-6757072 Lactuca sativa
Lsat_1_v5_gn_1_5820 5.0kb downstream 5.0kb downstream 8684   true Lsat_1_v8_lg_1: 6743389-6752072 Lactuca sativa
Lsat_1_v5_gn_1_5820 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 6743389-6748388 Lactuca sativa
Lsat_1_v5_gn_1_5820 10.0kb upstream 10.0kb upstream 13684   true Lsat_1_v8_lg_1: 6748389-6762072 Lactuca sativa
Lsat_1_v5_gn_1_5820 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 6752073-6762072 Lactuca sativa
Lsat_1_v5_gn_1_5820 10.0kb downstream 10.0kb downstream 13684   true Lsat_1_v8_lg_1: 6738389-6752072 Lactuca sativa
Lsat_1_v5_gn_1_5820 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 6738389-6748388 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
121466937 5263 Asterids View MSA
123736754 5271 Pentapetalae View MSA
122769876 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain