Gene : Lsat_1_v5_gn_1_9280 L. sativa V8
Defline:  (1 of 2) K00166 - 2-oxoisovalerate dehydrogenase E1 component alpha subunit (BCKDHA, bkdA1) Genomic Order:  289
Name:  ? Lsat_1_v5_gn_1_9280 Secondary Identifier:  ? PAC:38947845
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-5046 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_9280 0.5kb upstream 0.5kb upstream 5809   true Lsat_1_v8_lg_1: 11095371-11101179 Lactuca sativa
Lsat_1_v5_gn_1_9280 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 11095371-11095870 Lactuca sativa
Lsat_1_v5_gn_1_9280 0.5kb downstream 0.5kb downstream 5809   true Lsat_1_v8_lg_1: 11095871-11101679 Lactuca sativa
Lsat_1_v5_gn_1_9280 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 11101180-11101679 Lactuca sativa
Lsat_1_v5_gn_1_9280 1.0kb upstream 1.0kb upstream 6309   true Lsat_1_v8_lg_1: 11094871-11101179 Lactuca sativa
Lsat_1_v5_gn_1_9280 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 11094871-11095870 Lactuca sativa
Lsat_1_v5_gn_1_9280 1.0kb downstream 1.0kb downstream 6309   true Lsat_1_v8_lg_1: 11095871-11102179 Lactuca sativa
Lsat_1_v5_gn_1_9280 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 11101180-11102179 Lactuca sativa
Lsat_1_v5_gn_1_9280 2.0kb upstream 2.0kb upstream 7309   true Lsat_1_v8_lg_1: 11093871-11101179 Lactuca sativa
Lsat_1_v5_gn_1_9280 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 11093871-11095870 Lactuca sativa
Lsat_1_v5_gn_1_9280 2.0kb downstream 2.0kb downstream 7309   true Lsat_1_v8_lg_1: 11095871-11103179 Lactuca sativa
Lsat_1_v5_gn_1_9280 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 11101180-11103179 Lactuca sativa
Lsat_1_v5_gn_1_9280 5.0kb upstream 5.0kb upstream 10309   true Lsat_1_v8_lg_1: 11090871-11101179 Lactuca sativa
Lsat_1_v5_gn_1_9280 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 11090871-11095870 Lactuca sativa
Lsat_1_v5_gn_1_9280 5.0kb downstream 5.0kb downstream 10309   true Lsat_1_v8_lg_1: 11095871-11106179 Lactuca sativa
Lsat_1_v5_gn_1_9280 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 11101180-11106179 Lactuca sativa
Lsat_1_v5_gn_1_9280 10.0kb upstream 10.0kb upstream 15309   true Lsat_1_v8_lg_1: 11085871-11101179 Lactuca sativa
Lsat_1_v5_gn_1_9280 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 11085871-11095870 Lactuca sativa
Lsat_1_v5_gn_1_9280 10.0kb downstream 10.0kb downstream 15309   true Lsat_1_v8_lg_1: 11095871-11111179 Lactuca sativa
Lsat_1_v5_gn_1_9280 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 11101180-11111179 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121481081 5263 Asterids View MSA
123750640 5271 Pentapetalae View MSA
122791863 5272 Eudicot View MSA
122044172 5273 Angiosperm View MSA
121346270 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain