Gene : Lsat_1_v5_gn_2_106401 L. sativa V8
Defline:  (1 of 335) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  3080
Name:  ? Lsat_1_v5_gn_2_106401 Secondary Identifier:  ? PAC:38962181
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_106401 0.5kb upstream 0.5kb upstream 1597   true Lsat_1_v8_lg_2: 183886910-183888506 Lactuca sativa
Lsat_1_v5_gn_2_106401 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 183888007-183888506 Lactuca sativa
Lsat_1_v5_gn_2_106401 0.5kb downstream 0.5kb downstream 1597   true Lsat_1_v8_lg_2: 183886410-183888006 Lactuca sativa
Lsat_1_v5_gn_2_106401 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 183886410-183886909 Lactuca sativa
Lsat_1_v5_gn_2_106401 1.0kb upstream 1.0kb upstream 2097   true Lsat_1_v8_lg_2: 183886910-183889006 Lactuca sativa
Lsat_1_v5_gn_2_106401 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 183888007-183889006 Lactuca sativa
Lsat_1_v5_gn_2_106401 1.0kb downstream 1.0kb downstream 2097   true Lsat_1_v8_lg_2: 183885910-183888006 Lactuca sativa
Lsat_1_v5_gn_2_106401 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 183885910-183886909 Lactuca sativa
Lsat_1_v5_gn_2_106401 2.0kb upstream 2.0kb upstream 3097   true Lsat_1_v8_lg_2: 183886910-183890006 Lactuca sativa
Lsat_1_v5_gn_2_106401 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 183888007-183890006 Lactuca sativa
Lsat_1_v5_gn_2_106401 2.0kb downstream 2.0kb downstream 3097   true Lsat_1_v8_lg_2: 183884910-183888006 Lactuca sativa
Lsat_1_v5_gn_2_106401 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 183884910-183886909 Lactuca sativa
Lsat_1_v5_gn_2_106401 5.0kb upstream 5.0kb upstream 6097   true Lsat_1_v8_lg_2: 183886910-183893006 Lactuca sativa
Lsat_1_v5_gn_2_106401 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 183888007-183893006 Lactuca sativa
Lsat_1_v5_gn_2_106401 5.0kb downstream 5.0kb downstream 6097   true Lsat_1_v8_lg_2: 183881910-183888006 Lactuca sativa
Lsat_1_v5_gn_2_106401 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 183881910-183886909 Lactuca sativa
Lsat_1_v5_gn_2_106401 10.0kb upstream 10.0kb upstream 11097   true Lsat_1_v8_lg_2: 183886910-183898006 Lactuca sativa
Lsat_1_v5_gn_2_106401 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 183888007-183898006 Lactuca sativa
Lsat_1_v5_gn_2_106401 10.0kb downstream 10.0kb downstream 11097   true Lsat_1_v8_lg_2: 183876910-183888006 Lactuca sativa
Lsat_1_v5_gn_2_106401 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 183876910-183886909 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478431 5263 Asterids View MSA
123741422 5271 Pentapetalae View MSA
122786539 5272 Eudicot View MSA
122041629 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121309872 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain