Gene : Lsat_1_v5_gn_1_75540 L. sativa V8
Defline:  (1 of 2) K01703 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit (leuC) Genomic Order:  2458
Name:  ? Lsat_1_v5_gn_1_75540 Secondary Identifier:  ? PAC:38946687
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa BRANCHED-CHAIN-AA-SYN-PWY Lactuca sativa pathologic  
Lsativa LEUSYN-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_75540 0.5kb upstream 0.5kb upstream 4120   true Lsat_1_v8_lg_1: 88517112-88521231 Lactuca sativa
Lsat_1_v5_gn_1_75540 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 88520732-88521231 Lactuca sativa
Lsat_1_v5_gn_1_75540 0.5kb downstream 0.5kb downstream 4120   true Lsat_1_v8_lg_1: 88516612-88520731 Lactuca sativa
Lsat_1_v5_gn_1_75540 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 88516612-88517111 Lactuca sativa
Lsat_1_v5_gn_1_75540 1.0kb upstream 1.0kb upstream 4620   true Lsat_1_v8_lg_1: 88517112-88521731 Lactuca sativa
Lsat_1_v5_gn_1_75540 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 88520732-88521731 Lactuca sativa
Lsat_1_v5_gn_1_75540 1.0kb downstream 1.0kb downstream 4620   true Lsat_1_v8_lg_1: 88516112-88520731 Lactuca sativa
Lsat_1_v5_gn_1_75540 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 88516112-88517111 Lactuca sativa
Lsat_1_v5_gn_1_75540 2.0kb upstream 2.0kb upstream 5620   true Lsat_1_v8_lg_1: 88517112-88522731 Lactuca sativa
Lsat_1_v5_gn_1_75540 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 88520732-88522731 Lactuca sativa
Lsat_1_v5_gn_1_75540 2.0kb downstream 2.0kb downstream 5620   true Lsat_1_v8_lg_1: 88515112-88520731 Lactuca sativa
Lsat_1_v5_gn_1_75540 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 88515112-88517111 Lactuca sativa
Lsat_1_v5_gn_1_75540 5.0kb upstream 5.0kb upstream 8620   true Lsat_1_v8_lg_1: 88517112-88525731 Lactuca sativa
Lsat_1_v5_gn_1_75540 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 88520732-88525731 Lactuca sativa
Lsat_1_v5_gn_1_75540 5.0kb downstream 5.0kb downstream 8620   true Lsat_1_v8_lg_1: 88512112-88520731 Lactuca sativa
Lsat_1_v5_gn_1_75540 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 88512112-88517111 Lactuca sativa
Lsat_1_v5_gn_1_75540 10.0kb upstream 10.0kb upstream 13620   true Lsat_1_v8_lg_1: 88517112-88530731 Lactuca sativa
Lsat_1_v5_gn_1_75540 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 88520732-88530731 Lactuca sativa
Lsat_1_v5_gn_1_75540 10.0kb downstream 10.0kb downstream 13620   true Lsat_1_v8_lg_1: 88507112-88520731 Lactuca sativa
Lsat_1_v5_gn_1_75540 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 88507112-88517111 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469196 5263 Asterids View MSA
123737905 5271 Pentapetalae View MSA
122792861 5272 Eudicot View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain