Gene : Lsat_1_v5_gn_2_108461 L. sativa V8
Defline:  (1 of 1) PTHR22600//PTHR22600:SF18 - BETA-HEXOSAMINIDASE // SUBFAMILY NOT NAMED Genomic Order:  3127
Name:  ? Lsat_1_v5_gn_2_108461 Secondary Identifier:  ? PAC:38959119
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6902 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_108461 0.5kb upstream 0.5kb upstream 3887   true Lsat_1_v8_lg_2: 185042767-185046653 Lactuca sativa
Lsat_1_v5_gn_2_108461 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 185046154-185046653 Lactuca sativa
Lsat_1_v5_gn_2_108461 0.5kb downstream 0.5kb downstream 3887   true Lsat_1_v8_lg_2: 185042267-185046153 Lactuca sativa
Lsat_1_v5_gn_2_108461 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 185042267-185042766 Lactuca sativa
Lsat_1_v5_gn_2_108461 1.0kb upstream 1.0kb upstream 4387   true Lsat_1_v8_lg_2: 185042767-185047153 Lactuca sativa
Lsat_1_v5_gn_2_108461 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 185046154-185047153 Lactuca sativa
Lsat_1_v5_gn_2_108461 1.0kb downstream 1.0kb downstream 4387   true Lsat_1_v8_lg_2: 185041767-185046153 Lactuca sativa
Lsat_1_v5_gn_2_108461 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 185041767-185042766 Lactuca sativa
Lsat_1_v5_gn_2_108461 2.0kb upstream 2.0kb upstream 5387   true Lsat_1_v8_lg_2: 185042767-185048153 Lactuca sativa
Lsat_1_v5_gn_2_108461 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 185046154-185048153 Lactuca sativa
Lsat_1_v5_gn_2_108461 2.0kb downstream 2.0kb downstream 5387   true Lsat_1_v8_lg_2: 185040767-185046153 Lactuca sativa
Lsat_1_v5_gn_2_108461 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 185040767-185042766 Lactuca sativa
Lsat_1_v5_gn_2_108461 5.0kb upstream 5.0kb upstream 8387   true Lsat_1_v8_lg_2: 185042767-185051153 Lactuca sativa
Lsat_1_v5_gn_2_108461 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 185046154-185051153 Lactuca sativa
Lsat_1_v5_gn_2_108461 5.0kb downstream 5.0kb downstream 8387   true Lsat_1_v8_lg_2: 185037767-185046153 Lactuca sativa
Lsat_1_v5_gn_2_108461 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 185037767-185042766 Lactuca sativa
Lsat_1_v5_gn_2_108461 10.0kb upstream 10.0kb upstream 13387   true Lsat_1_v8_lg_2: 185042767-185056153 Lactuca sativa
Lsat_1_v5_gn_2_108461 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 185046154-185056153 Lactuca sativa
Lsat_1_v5_gn_2_108461 10.0kb downstream 10.0kb downstream 13387   true Lsat_1_v8_lg_2: 185032767-185046153 Lactuca sativa
Lsat_1_v5_gn_2_108461 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 185032767-185042766 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470391 5263 Asterids View MSA
123738133 5271 Pentapetalae View MSA
122790534 5272 Eudicot View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain