Gene : Lsat_1_v5_gn_2_109900 L. sativa V8
Defline:  (1 of 6) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  3199
Name:  ? Lsat_1_v5_gn_2_109900 Secondary Identifier:  ? PAC:38961082
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_109900 0.5kb upstream 0.5kb upstream 4394   true Lsat_1_v8_lg_2: 188194228-188198621 Lactuca sativa
Lsat_1_v5_gn_2_109900 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 188194228-188194727 Lactuca sativa
Lsat_1_v5_gn_2_109900 0.5kb downstream 0.5kb downstream 4394   true Lsat_1_v8_lg_2: 188194728-188199121 Lactuca sativa
Lsat_1_v5_gn_2_109900 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 188198622-188199121 Lactuca sativa
Lsat_1_v5_gn_2_109900 1.0kb upstream 1.0kb upstream 4894   true Lsat_1_v8_lg_2: 188193728-188198621 Lactuca sativa
Lsat_1_v5_gn_2_109900 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 188193728-188194727 Lactuca sativa
Lsat_1_v5_gn_2_109900 1.0kb downstream 1.0kb downstream 4894   true Lsat_1_v8_lg_2: 188194728-188199621 Lactuca sativa
Lsat_1_v5_gn_2_109900 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 188198622-188199621 Lactuca sativa
Lsat_1_v5_gn_2_109900 2.0kb upstream 2.0kb upstream 5894   true Lsat_1_v8_lg_2: 188192728-188198621 Lactuca sativa
Lsat_1_v5_gn_2_109900 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 188192728-188194727 Lactuca sativa
Lsat_1_v5_gn_2_109900 2.0kb downstream 2.0kb downstream 5894   true Lsat_1_v8_lg_2: 188194728-188200621 Lactuca sativa
Lsat_1_v5_gn_2_109900 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 188198622-188200621 Lactuca sativa
Lsat_1_v5_gn_2_109900 5.0kb upstream 5.0kb upstream 8894   true Lsat_1_v8_lg_2: 188189728-188198621 Lactuca sativa
Lsat_1_v5_gn_2_109900 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 188189728-188194727 Lactuca sativa
Lsat_1_v5_gn_2_109900 5.0kb downstream 5.0kb downstream 8894   true Lsat_1_v8_lg_2: 188194728-188203621 Lactuca sativa
Lsat_1_v5_gn_2_109900 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 188198622-188203621 Lactuca sativa
Lsat_1_v5_gn_2_109900 10.0kb upstream 10.0kb upstream 13894   true Lsat_1_v8_lg_2: 188184728-188198621 Lactuca sativa
Lsat_1_v5_gn_2_109900 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 188184728-188194727 Lactuca sativa
Lsat_1_v5_gn_2_109900 10.0kb downstream 10.0kb downstream 13894   true Lsat_1_v8_lg_2: 188194728-188208621 Lactuca sativa
Lsat_1_v5_gn_2_109900 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 188198622-188208621 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470362 5263 Asterids View MSA
123738487 5271 Pentapetalae View MSA
122789712 5272 Eudicot View MSA
122044126 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain