Gene : Lsat_1_v5_gn_2_112960 L. sativa V8
Defline:  (1 of 2) PTHR23315//PTHR23315:SF111 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 14 Genomic Order:  3288
Name:  ? Lsat_1_v5_gn_2_112960 Secondary Identifier:  ? PAC:38960955
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_112960 0.5kb upstream 0.5kb upstream 5376   true Lsat_1_v8_lg_2: 190771984-190777359 Lactuca sativa
Lsat_1_v5_gn_2_112960 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 190776860-190777359 Lactuca sativa
Lsat_1_v5_gn_2_112960 0.5kb downstream 0.5kb downstream 5376   true Lsat_1_v8_lg_2: 190771484-190776859 Lactuca sativa
Lsat_1_v5_gn_2_112960 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 190771484-190771983 Lactuca sativa
Lsat_1_v5_gn_2_112960 1.0kb upstream 1.0kb upstream 5876   true Lsat_1_v8_lg_2: 190771984-190777859 Lactuca sativa
Lsat_1_v5_gn_2_112960 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 190776860-190777859 Lactuca sativa
Lsat_1_v5_gn_2_112960 1.0kb downstream 1.0kb downstream 5876   true Lsat_1_v8_lg_2: 190770984-190776859 Lactuca sativa
Lsat_1_v5_gn_2_112960 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 190770984-190771983 Lactuca sativa
Lsat_1_v5_gn_2_112960 2.0kb upstream 2.0kb upstream 6876   true Lsat_1_v8_lg_2: 190771984-190778859 Lactuca sativa
Lsat_1_v5_gn_2_112960 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 190776860-190778859 Lactuca sativa
Lsat_1_v5_gn_2_112960 2.0kb downstream 2.0kb downstream 6876   true Lsat_1_v8_lg_2: 190769984-190776859 Lactuca sativa
Lsat_1_v5_gn_2_112960 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 190769984-190771983 Lactuca sativa
Lsat_1_v5_gn_2_112960 5.0kb upstream 5.0kb upstream 9876   true Lsat_1_v8_lg_2: 190771984-190781859 Lactuca sativa
Lsat_1_v5_gn_2_112960 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 190776860-190781859 Lactuca sativa
Lsat_1_v5_gn_2_112960 5.0kb downstream 5.0kb downstream 9876   true Lsat_1_v8_lg_2: 190766984-190776859 Lactuca sativa
Lsat_1_v5_gn_2_112960 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 190766984-190771983 Lactuca sativa
Lsat_1_v5_gn_2_112960 10.0kb upstream 10.0kb upstream 14876   true Lsat_1_v8_lg_2: 190771984-190786859 Lactuca sativa
Lsat_1_v5_gn_2_112960 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 190776860-190786859 Lactuca sativa
Lsat_1_v5_gn_2_112960 10.0kb downstream 10.0kb downstream 14876   true Lsat_1_v8_lg_2: 190761984-190776859 Lactuca sativa
Lsat_1_v5_gn_2_112960 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 190761984-190771983 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473151 5263 Asterids View MSA
123739906 5271 Pentapetalae View MSA
122790994 5272 Eudicot View MSA
122042286 5273 Angiosperm View MSA
121349135 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain