Gene : Lsat_1_v5_gn_2_114381 L. sativa V8
Defline:  (1 of 1) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  3332
Name:  ? Lsat_1_v5_gn_2_114381 Secondary Identifier:  ? PAC:38961554
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa ARO-PWY Lactuca sativa pathologic  
Lsativa PWY-6163 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_114381 0.5kb upstream 0.5kb upstream 4058   true Lsat_1_v8_lg_2: 192475399-192479456 Lactuca sativa
Lsat_1_v5_gn_2_114381 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 192475399-192475898 Lactuca sativa
Lsat_1_v5_gn_2_114381 0.5kb downstream 0.5kb downstream 4058   true Lsat_1_v8_lg_2: 192475899-192479956 Lactuca sativa
Lsat_1_v5_gn_2_114381 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 192479457-192479956 Lactuca sativa
Lsat_1_v5_gn_2_114381 1.0kb upstream 1.0kb upstream 4558   true Lsat_1_v8_lg_2: 192474899-192479456 Lactuca sativa
Lsat_1_v5_gn_2_114381 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 192474899-192475898 Lactuca sativa
Lsat_1_v5_gn_2_114381 1.0kb downstream 1.0kb downstream 4558   true Lsat_1_v8_lg_2: 192475899-192480456 Lactuca sativa
Lsat_1_v5_gn_2_114381 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 192479457-192480456 Lactuca sativa
Lsat_1_v5_gn_2_114381 2.0kb upstream 2.0kb upstream 5558   true Lsat_1_v8_lg_2: 192473899-192479456 Lactuca sativa
Lsat_1_v5_gn_2_114381 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 192473899-192475898 Lactuca sativa
Lsat_1_v5_gn_2_114381 2.0kb downstream 2.0kb downstream 5558   true Lsat_1_v8_lg_2: 192475899-192481456 Lactuca sativa
Lsat_1_v5_gn_2_114381 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 192479457-192481456 Lactuca sativa
Lsat_1_v5_gn_2_114381 5.0kb upstream 5.0kb upstream 8558   true Lsat_1_v8_lg_2: 192470899-192479456 Lactuca sativa
Lsat_1_v5_gn_2_114381 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 192470899-192475898 Lactuca sativa
Lsat_1_v5_gn_2_114381 5.0kb downstream 5.0kb downstream 8558   true Lsat_1_v8_lg_2: 192475899-192484456 Lactuca sativa
Lsat_1_v5_gn_2_114381 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 192479457-192484456 Lactuca sativa
Lsat_1_v5_gn_2_114381 10.0kb upstream 10.0kb upstream 13558   true Lsat_1_v8_lg_2: 192465899-192479456 Lactuca sativa
Lsat_1_v5_gn_2_114381 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 192465899-192475898 Lactuca sativa
Lsat_1_v5_gn_2_114381 10.0kb downstream 10.0kb downstream 13558   true Lsat_1_v8_lg_2: 192475899-192489456 Lactuca sativa
Lsat_1_v5_gn_2_114381 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 192479457-192489456 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
121475798 5263 Asterids View MSA
123747909 5271 Pentapetalae View MSA
122787011 5272 Eudicot View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain