Gene : Lsat_1_v5_gn_2_51020 L. sativa V8
Defline:  (1 of 1) PF00421//PF02874 - Photosystem II protein (PSII) // ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) Genomic Order:  1327
Name:  ? Lsat_1_v5_gn_2_51020 Secondary Identifier:  ? PAC:38960685
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_51020 0.5kb upstream 0.5kb upstream 2115   true Lsat_1_v8_lg_2: 111606723-111608837 Lactuca sativa
Lsat_1_v5_gn_2_51020 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 111606723-111607222 Lactuca sativa
Lsat_1_v5_gn_2_51020 0.5kb downstream 0.5kb downstream 2115   true Lsat_1_v8_lg_2: 111607223-111609337 Lactuca sativa
Lsat_1_v5_gn_2_51020 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 111608838-111609337 Lactuca sativa
Lsat_1_v5_gn_2_51020 1.0kb upstream 1.0kb upstream 2615   true Lsat_1_v8_lg_2: 111606223-111608837 Lactuca sativa
Lsat_1_v5_gn_2_51020 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 111606223-111607222 Lactuca sativa
Lsat_1_v5_gn_2_51020 1.0kb downstream 1.0kb downstream 2615   true Lsat_1_v8_lg_2: 111607223-111609837 Lactuca sativa
Lsat_1_v5_gn_2_51020 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 111608838-111609837 Lactuca sativa
Lsat_1_v5_gn_2_51020 2.0kb upstream 2.0kb upstream 3615   true Lsat_1_v8_lg_2: 111605223-111608837 Lactuca sativa
Lsat_1_v5_gn_2_51020 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 111605223-111607222 Lactuca sativa
Lsat_1_v5_gn_2_51020 2.0kb downstream 2.0kb downstream 3615   true Lsat_1_v8_lg_2: 111607223-111610837 Lactuca sativa
Lsat_1_v5_gn_2_51020 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 111608838-111610837 Lactuca sativa
Lsat_1_v5_gn_2_51020 5.0kb upstream 5.0kb upstream 6615   true Lsat_1_v8_lg_2: 111602223-111608837 Lactuca sativa
Lsat_1_v5_gn_2_51020 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 111602223-111607222 Lactuca sativa
Lsat_1_v5_gn_2_51020 5.0kb downstream 5.0kb downstream 6615   true Lsat_1_v8_lg_2: 111607223-111613837 Lactuca sativa
Lsat_1_v5_gn_2_51020 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 111608838-111613837 Lactuca sativa
Lsat_1_v5_gn_2_51020 10.0kb upstream 10.0kb upstream 11615   true Lsat_1_v8_lg_2: 111597223-111608837 Lactuca sativa
Lsat_1_v5_gn_2_51020 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 111597223-111607222 Lactuca sativa
Lsat_1_v5_gn_2_51020 10.0kb downstream 10.0kb downstream 11615   true Lsat_1_v8_lg_2: 111607223-111618837 Lactuca sativa
Lsat_1_v5_gn_2_51020 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 111608838-111618837 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121481691 5263 Asterids View MSA
123753691 5271 Pentapetalae View MSA
122787525 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain