Gene : Lsat_1_v5_gn_2_56040 L. sativa V8
Defline:  (1 of 3) PTHR13871//PTHR13871:SF30 - THIOREDOXIN // CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN-RELATED Genomic Order:  1452
Name:  ? Lsat_1_v5_gn_2_56040 Secondary Identifier:  ? PAC:38961723
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7039 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_56040 0.5kb upstream 0.5kb upstream 1716   true Lsat_1_v8_lg_2: 123280903-123282618 Lactuca sativa
Lsat_1_v5_gn_2_56040 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 123282119-123282618 Lactuca sativa
Lsat_1_v5_gn_2_56040 0.5kb downstream 0.5kb downstream 1716   true Lsat_1_v8_lg_2: 123280403-123282118 Lactuca sativa
Lsat_1_v5_gn_2_56040 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 123280403-123280902 Lactuca sativa
Lsat_1_v5_gn_2_56040 1.0kb upstream 1.0kb upstream 2216   true Lsat_1_v8_lg_2: 123280903-123283118 Lactuca sativa
Lsat_1_v5_gn_2_56040 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 123282119-123283118 Lactuca sativa
Lsat_1_v5_gn_2_56040 1.0kb downstream 1.0kb downstream 2216   true Lsat_1_v8_lg_2: 123279903-123282118 Lactuca sativa
Lsat_1_v5_gn_2_56040 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 123279903-123280902 Lactuca sativa
Lsat_1_v5_gn_2_56040 2.0kb upstream 2.0kb upstream 3216   true Lsat_1_v8_lg_2: 123280903-123284118 Lactuca sativa
Lsat_1_v5_gn_2_56040 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 123282119-123284118 Lactuca sativa
Lsat_1_v5_gn_2_56040 2.0kb downstream 2.0kb downstream 3216   true Lsat_1_v8_lg_2: 123278903-123282118 Lactuca sativa
Lsat_1_v5_gn_2_56040 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 123278903-123280902 Lactuca sativa
Lsat_1_v5_gn_2_56040 5.0kb upstream 5.0kb upstream 6216   true Lsat_1_v8_lg_2: 123280903-123287118 Lactuca sativa
Lsat_1_v5_gn_2_56040 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 123282119-123287118 Lactuca sativa
Lsat_1_v5_gn_2_56040 5.0kb downstream 5.0kb downstream 6216   true Lsat_1_v8_lg_2: 123275903-123282118 Lactuca sativa
Lsat_1_v5_gn_2_56040 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 123275903-123280902 Lactuca sativa
Lsat_1_v5_gn_2_56040 10.0kb upstream 10.0kb upstream 11216   true Lsat_1_v8_lg_2: 123280903-123292118 Lactuca sativa
Lsat_1_v5_gn_2_56040 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 123282119-123292118 Lactuca sativa
Lsat_1_v5_gn_2_56040 10.0kb downstream 10.0kb downstream 11216   true Lsat_1_v8_lg_2: 123270903-123282118 Lactuca sativa
Lsat_1_v5_gn_2_56040 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 123270903-123280902 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479767 5263 Asterids View MSA
123750493 5271 Pentapetalae View MSA
122796546 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain