Gene : Lsat_1_v5_gn_2_86340 L. sativa V8

Defline:  (1 of 1) 4.2.1.122//4.2.1.20 - Tryptophan synthase (indole-salvaging) / Tryptophan synthase beta-2 // Tryptophan synthase / Tryptophan synthetase Genomic Order:  2428
Name:  ? Lsat_1_v5_gn_2_86340 Secondary Identifier:  ? PAC:38959760

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa TRPSYN-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_86340 0.5kb upstream 0.5kb upstream 2913   true Lsat_1_v8_lg_2: 164874228-164877140 Lactuca sativa
Lsat_1_v5_gn_2_86340 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 164876641-164877140 Lactuca sativa
Lsat_1_v5_gn_2_86340 0.5kb downstream 0.5kb downstream 2913   true Lsat_1_v8_lg_2: 164873728-164876640 Lactuca sativa
Lsat_1_v5_gn_2_86340 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 164873728-164874227 Lactuca sativa
Lsat_1_v5_gn_2_86340 1.0kb upstream 1.0kb upstream 3413   true Lsat_1_v8_lg_2: 164874228-164877640 Lactuca sativa
Lsat_1_v5_gn_2_86340 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 164876641-164877640 Lactuca sativa
Lsat_1_v5_gn_2_86340 1.0kb downstream 1.0kb downstream 3413   true Lsat_1_v8_lg_2: 164873228-164876640 Lactuca sativa
Lsat_1_v5_gn_2_86340 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 164873228-164874227 Lactuca sativa
Lsat_1_v5_gn_2_86340 2.0kb upstream 2.0kb upstream 4413   true Lsat_1_v8_lg_2: 164874228-164878640 Lactuca sativa
Lsat_1_v5_gn_2_86340 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 164876641-164878640 Lactuca sativa
Lsat_1_v5_gn_2_86340 2.0kb downstream 2.0kb downstream 4413   true Lsat_1_v8_lg_2: 164872228-164876640 Lactuca sativa
Lsat_1_v5_gn_2_86340 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 164872228-164874227 Lactuca sativa
Lsat_1_v5_gn_2_86340 5.0kb upstream 5.0kb upstream 7413   true Lsat_1_v8_lg_2: 164874228-164881640 Lactuca sativa
Lsat_1_v5_gn_2_86340 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 164876641-164881640 Lactuca sativa
Lsat_1_v5_gn_2_86340 5.0kb downstream 5.0kb downstream 7413   true Lsat_1_v8_lg_2: 164869228-164876640 Lactuca sativa
Lsat_1_v5_gn_2_86340 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 164869228-164874227 Lactuca sativa
Lsat_1_v5_gn_2_86340 10.0kb upstream 10.0kb upstream 12413   true Lsat_1_v8_lg_2: 164874228-164886640 Lactuca sativa
Lsat_1_v5_gn_2_86340 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 164876641-164886640 Lactuca sativa
Lsat_1_v5_gn_2_86340 10.0kb downstream 10.0kb downstream 12413   true Lsat_1_v8_lg_2: 164864228-164876640 Lactuca sativa
Lsat_1_v5_gn_2_86340 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 164864228-164874227 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474420 5263 Asterids View MSA
123740538 5271 Pentapetalae View MSA
122790993 5272 Eudicot View MSA
122043348 5273 Angiosperm View MSA
121348084 5274 Embryophyte View MSA
123380724 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain