Gene : Lsat_1_v5_gn_3_125760 L. sativa V8
Defline:  (1 of 3) K01402 - matrix metalloproteinase-8 (neutrophil collagenase) [EC:3.4.24.34] (MMP8) Genomic Order:  3587
Name:  ? Lsat_1_v5_gn_3_125760 Secondary Identifier:  ? PAC:38916253
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_125760 0.5kb upstream 0.5kb upstream 1789   true Lsat_1_v8_lg_3: 212001269-212003057 Lactuca sativa
Lsat_1_v5_gn_3_125760 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 212002558-212003057 Lactuca sativa
Lsat_1_v5_gn_3_125760 0.5kb downstream 0.5kb downstream 1789   true Lsat_1_v8_lg_3: 212000769-212002557 Lactuca sativa
Lsat_1_v5_gn_3_125760 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 212000769-212001268 Lactuca sativa
Lsat_1_v5_gn_3_125760 1.0kb upstream 1.0kb upstream 2289   true Lsat_1_v8_lg_3: 212001269-212003557 Lactuca sativa
Lsat_1_v5_gn_3_125760 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 212002558-212003557 Lactuca sativa
Lsat_1_v5_gn_3_125760 1.0kb downstream 1.0kb downstream 2289   true Lsat_1_v8_lg_3: 212000269-212002557 Lactuca sativa
Lsat_1_v5_gn_3_125760 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 212000269-212001268 Lactuca sativa
Lsat_1_v5_gn_3_125760 2.0kb upstream 2.0kb upstream 3289   true Lsat_1_v8_lg_3: 212001269-212004557 Lactuca sativa
Lsat_1_v5_gn_3_125760 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 212002558-212004557 Lactuca sativa
Lsat_1_v5_gn_3_125760 2.0kb downstream 2.0kb downstream 3289   true Lsat_1_v8_lg_3: 211999269-212002557 Lactuca sativa
Lsat_1_v5_gn_3_125760 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 211999269-212001268 Lactuca sativa
Lsat_1_v5_gn_3_125760 5.0kb upstream 5.0kb upstream 6289   true Lsat_1_v8_lg_3: 212001269-212007557 Lactuca sativa
Lsat_1_v5_gn_3_125760 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 212002558-212007557 Lactuca sativa
Lsat_1_v5_gn_3_125760 5.0kb downstream 5.0kb downstream 6289   true Lsat_1_v8_lg_3: 211996269-212002557 Lactuca sativa
Lsat_1_v5_gn_3_125760 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 211996269-212001268 Lactuca sativa
Lsat_1_v5_gn_3_125760 10.0kb upstream 10.0kb upstream 11289   true Lsat_1_v8_lg_3: 212001269-212012557 Lactuca sativa
Lsat_1_v5_gn_3_125760 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 212002558-212012557 Lactuca sativa
Lsat_1_v5_gn_3_125760 10.0kb downstream 10.0kb downstream 11289   true Lsat_1_v8_lg_3: 211991269-212002557 Lactuca sativa
Lsat_1_v5_gn_3_125760 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 211991269-212001268 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026255 5273 Angiosperm View MSA
121482079 5263 Asterids View MSA
123750653 5271 Pentapetalae View MSA
122795756 5272 Eudicot View MSA
121350353 5274 Embryophyte View MSA
123381692 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain