Gene : Lsat_1_v5_gn_3_138360 L. sativa V8
Defline:  (1 of 1) PTHR12358//PTHR12358:SF43 - SPHINGOSINE KINASE // SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  3891
Name:  ? Lsat_1_v5_gn_3_138360 Secondary Identifier:  ? PAC:38919781
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7039 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_138360 0.5kb upstream 0.5kb upstream 5717   true Lsat_1_v8_lg_3: 250432393-250438109 Lactuca sativa
Lsat_1_v5_gn_3_138360 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 250437610-250438109 Lactuca sativa
Lsat_1_v5_gn_3_138360 0.5kb downstream 0.5kb downstream 5717   true Lsat_1_v8_lg_3: 250431893-250437609 Lactuca sativa
Lsat_1_v5_gn_3_138360 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 250431893-250432392 Lactuca sativa
Lsat_1_v5_gn_3_138360 1.0kb upstream 1.0kb upstream 6217   true Lsat_1_v8_lg_3: 250432393-250438609 Lactuca sativa
Lsat_1_v5_gn_3_138360 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 250437610-250438609 Lactuca sativa
Lsat_1_v5_gn_3_138360 1.0kb downstream 1.0kb downstream 6217   true Lsat_1_v8_lg_3: 250431393-250437609 Lactuca sativa
Lsat_1_v5_gn_3_138360 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 250431393-250432392 Lactuca sativa
Lsat_1_v5_gn_3_138360 2.0kb upstream 2.0kb upstream 7217   true Lsat_1_v8_lg_3: 250432393-250439609 Lactuca sativa
Lsat_1_v5_gn_3_138360 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 250437610-250439609 Lactuca sativa
Lsat_1_v5_gn_3_138360 2.0kb downstream 2.0kb downstream 7217   true Lsat_1_v8_lg_3: 250430393-250437609 Lactuca sativa
Lsat_1_v5_gn_3_138360 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 250430393-250432392 Lactuca sativa
Lsat_1_v5_gn_3_138360 5.0kb upstream 5.0kb upstream 10217   true Lsat_1_v8_lg_3: 250432393-250442609 Lactuca sativa
Lsat_1_v5_gn_3_138360 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 250437610-250442609 Lactuca sativa
Lsat_1_v5_gn_3_138360 5.0kb downstream 5.0kb downstream 10217   true Lsat_1_v8_lg_3: 250427393-250437609 Lactuca sativa
Lsat_1_v5_gn_3_138360 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 250427393-250432392 Lactuca sativa
Lsat_1_v5_gn_3_138360 10.0kb upstream 10.0kb upstream 15217   true Lsat_1_v8_lg_3: 250432393-250447609 Lactuca sativa
Lsat_1_v5_gn_3_138360 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 250437610-250447609 Lactuca sativa
Lsat_1_v5_gn_3_138360 10.0kb downstream 10.0kb downstream 15217   true Lsat_1_v8_lg_3: 250422393-250437609 Lactuca sativa
Lsat_1_v5_gn_3_138360 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 250422393-250432392 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469933 5263 Asterids View MSA
123747106 5271 Pentapetalae View MSA
122789016 5272 Eudicot View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain